Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.8e-54 214.5 106 100.0
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 2.3e-35 152.1 76 93.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 8.3e-33 143.7 76 88.2
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 1.1e-32 143.3 76 88.2
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.1e-32 143.3 76 88.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 1.1e-32 143.3 76 88.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 1.1e-32 143.3 76 88.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 2.4e-32 142.1 76 88.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.2e-32 141.7 76 86.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 88.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 88.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 4.1e-32 141.4 76 86.8
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 88.2
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 88.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.4e-32 141.0 76 86.8
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 7.0e-32 140.6 76 86.8
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 85.5
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 85.5
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 86.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 85.5
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 86.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 86.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 86.8
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 86.8
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 9.2e-32 140.2 76 85.5
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 85.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 84.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 85.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 86.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 1.2e-31 139.8 76 85.5
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 1.6e-31 139.4 76 85.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 1.6e-31 139.4 76 86.8
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 1.6e-31 139.4 76 86.8
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 1.6e-31 139.4 76 85.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 86.8
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 86.8
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 2.0e-31 139.0 76 85.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 85.5
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 85.5
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 85.5
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 85.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 82.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 86.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 2.7e-31 138.7 76 85.5
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 85.5
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 85.5
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 85.5
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 84.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 85.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 3.5e-31 138.3 76 84.2
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 82.9
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 4.6e-31 137.9 76 85.5
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 5.9e-31 137.5 76 85.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 5.9e-31 137.5 76 85.5
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 5.9e-31 137.5 76 81.6
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 5.9e-31 137.5 76 84.2
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 7.8e-31 137.1 76 85.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 7.8e-31 137.1 76 84.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 7.8e-31 137.1 76 84.2
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 85.5
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 84.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 82.9
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 81.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 84.2
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 85.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 84.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 1.0e-30 136.7 76 85.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 1.3e-30 136.3 76 84.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 1.3e-30 136.3 76 85.5
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 1.7e-30 136.0 76 82.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 3.0e-30 135.2 76 82.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 3.0e-30 135.2 76 82.9
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.9e-30 134.8 76 84.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 3.9e-30 134.8 76 84.2
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 5.0e-30 134.4 76 82.9
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 5.0e-30 134.4 76 80.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 5.0e-30 134.4 76 81.6
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 6.6e-30 134.0 76 84.2
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 8.6e-30 133.7 76 80.3
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.6e-30 133.7 78 82.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 1.1e-29 133.3 76 81.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 1.1e-29 133.3 76 82.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 1.5e-29 132.9 76 81.6
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 1.5e-29 132.9 76 82.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 1.5e-29 132.9 76 82.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 1.9e-29 132.5 76 82.9
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 2.5e-29 132.1 76 78.9
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 2.5e-29 132.1 76 81.6
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.3e-29 131.7 76 80.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 4.3e-29 131.3 76 77.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 5.6e-29 131.0 76 80.3
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 7.3e-29 130.6 76 78.9
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 9.5e-29 130.2 76 80.3
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 2.1e-28 129.0 76 80.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 2.8e-28 128.6 76 78.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 3.6e-28 128.3 76 80.3
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.6e-28 128.3 75 80.0
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 8.0e-28 127.1 76 77.6
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 3.1e-27 125.2 68 85.3
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.8e-26 120.9 76 75.0
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.4e-24 115.5 68 82.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 5.4e-24 114.4 76 72.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-22 109.4 71 74.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.4e-18 94.7 53 84.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 6.0e-15 84.3 48 81.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.3e-13 78.2 45 80.0


User provided reference genes

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