Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 7.6e-118 427.2 214 100.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 2.2e-80 302.8 203 73.4
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 4.8e-80 301.6 203 73.4
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.6e-78 295.8 204 70.1
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.1e-76 290.4 184 76.6
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.9e-76 289.7 203 70.9
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 2.5e-76 289.3 204 72.1
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.2e-76 288.9 206 68.9
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 4.2e-76 288.5 164 81.7
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 4.2e-76 288.5 187 75.4
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 5.5e-76 288.1 164 81.7
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 7.2e-76 287.7 203 71.9
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 9.4e-76 287.3 196 70.9
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 9.4e-76 287.3 204 72.1
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 9.4e-76 287.3 209 68.4
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 4.7e-75 285.0 195 70.8
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 4.7e-75 285.0 201 70.6
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 4.7e-75 285.0 204 70.6
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 6.1e-75 284.6 173 77.5
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.3e-74 282.7 184 74.5
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 3.0e-74 282.3 199 72.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.9e-74 282.0 163 83.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 5.1e-74 281.6 206 67.5
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 5.1e-74 281.6 184 74.5
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 6.7e-74 281.2 176 75.6
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 8.8e-74 280.8 205 71.2
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.5e-73 280.0 204 68.6
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.6e-73 279.3 193 71.5
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.6e-73 279.3 179 74.9
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.6e-73 279.3 159 81.8
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 3.3e-73 278.9 179 76.5
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 3.3e-73 278.9 192 72.9
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.4e-73 278.5 196 70.4
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-73 278.1 201 69.2
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-73 278.1 201 69.7
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.7e-72 276.6 185 75.1
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.2e-72 276.2 179 74.3
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.8e-72 275.8 184 71.2
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 4.8e-72 275.0 159 83.0
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 8.2e-72 274.2 203 66.0
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.1e-71 273.9 204 68.6
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.1e-71 273.9 201 69.7
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.4e-71 273.5 174 76.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.4e-71 273.5 186 72.0
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.8e-71 273.1 159 79.9
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.4e-71 272.7 160 80.0
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 2.4e-71 272.7 201 69.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 2.4e-71 272.7 184 73.4
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 7.0e-71 271.2 182 71.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 7.0e-71 271.2 164 77.4
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 4.5e-70 268.5 205 66.3
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 7.7e-70 267.7 208 67.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.0e-69 267.3 173 72.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.0e-69 267.3 205 66.8
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.3e-69 266.9 181 72.4
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.8e-69 265.4 185 71.4
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 3.8e-69 265.4 167 75.4
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.1e-68 263.8 190 67.9
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 2.5e-68 262.7 180 71.7
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.2e-68 262.3 162 76.5
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 5.5e-68 261.5 181 70.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 7.2e-68 261.2 204 66.2
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 7.2e-68 261.2 183 69.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 7.2e-68 261.2 180 71.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 9.4e-68 260.8 168 69.6
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 1.2e-67 260.4 176 70.5
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.2e-67 260.4 185 70.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 2.7e-67 259.2 180 70.0
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 3.0e-66 255.8 170 75.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 4.0e-66 255.4 163 76.7
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.5e-65 253.4 168 75.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 2.0e-65 253.1 168 75.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.0e-65 253.1 168 75.6
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 5.7e-65 251.5 171 73.1
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 5.7e-65 251.5 188 68.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 7.5e-65 251.1 140 81.4
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 9.7e-65 250.8 168 74.4
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.3e-64 250.4 168 74.4
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.7e-64 248.8 204 65.7
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.7e-64 248.8 209 64.6
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.1e-63 247.3 169 72.8
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 2.4e-63 246.1 164 69.5
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 4.1e-63 245.4 168 73.8
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.3e-63 245.0 201 62.7
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.3e-63 245.0 201 63.2
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.7e-62 242.7 139 81.3
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 4.5e-62 241.9 164 74.4
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 5.9e-62 241.5 186 66.1
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.2e-61 239.6 166 66.9
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.8e-61 238.8 201 62.2
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.2e-60 235.7 136 81.6
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 4.2e-60 235.3 193 60.6
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-59 233.8 181 68.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.2e-59 233.8 168 63.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.7e-59 232.6 174 64.4
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.2e-58 228.4 138 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.2e-57 227.3 157 65.6
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 9.8e-57 224.2 139 78.4
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 3.5e-54 215.7 144 66.7
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.3e-53 213.8 177 63.3
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.7e-53 213.4 172 62.8
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 5.5e-52 208.4 172 61.6
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 9.4e-52 207.6 148 70.9
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.6e-51 206.8 158 65.8
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.2e-49 200.7 205 56.6
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.8e-49 197.6 188 57.4
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.4e-47 193.7 207 51.2
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.1e-47 192.2 213 52.1
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.3e-45 187.2 199 47.2
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 6.8e-42 174.9 96 82.3
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 1.8e-39 166.8 133 66.2
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.0e-37 161.0 96 80.2
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.5e-36 157.1 99 76.8
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.4e-34 150.6 128 60.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 5.2e-34 148.7 96 72.9
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.7e-32 143.7 98 67.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-32 143.3 78 83.3
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.4e-31 139.8 78 84.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.1e-26 124.4 146 44.5
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.2e-25 120.9 109 58.7
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.5e-25 120.6 93 63.4
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 9.8e-25 117.9 78 69.2
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 2.2e-24 116.7 93 61.3
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 6.4e-24 115.2 71 70.4
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.6e-19 99.4 129 47.3
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 8.1e-19 98.2 70 64.3
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.3e-16 90.9 93 52.7
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.9e-16 89.7 99 52.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 6.6e-13 78.6 65 56.9
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 3.3e-12 76.3 65 60.0
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 6.9e-10 68.6 39 74.4


User provided reference genes

Program Settings