Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 0.0e+00 1177.5 598 100.0
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 2.1e-221 772.7 647 63.4
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 1.0e-220 770.4 652 63.2
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.0e-220 768.8 649 62.6
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 6.6e-220 767.7 655 61.8
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.1e-219 766.9 668 61.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.2e-218 763.5 650 62.9
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.2e-218 763.5 649 62.9
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 4.0e-217 758.4 650 62.3
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 4.0e-217 758.4 650 61.5
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 2.6e-216 755.7 655 61.1
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 9.9e-216 753.8 659 61.2
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.7e-215 753.1 646 61.8
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 6.4e-215 751.1 650 61.8
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 8.4e-215 750.7 657 61.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.1e-214 750.4 651 61.1
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 2.4e-214 749.2 647 62.4
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 4.2e-214 748.4 646 61.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 7.1e-214 747.7 648 61.4
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.2e-213 746.9 649 61.5
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.3e-212 743.4 647 61.7
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 6.6e-212 741.1 650 60.2
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.3e-211 738.8 655 60.6
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 5.6e-211 738.0 651 59.8
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 7.3e-211 737.6 650 60.0
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.6e-211 737.3 649 60.9
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 6.2e-210 734.6 649 60.7
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 8.1e-210 734.2 647 61.1
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.4e-209 732.6 650 58.9
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.5e-208 729.9 614 62.2
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 2.0e-208 729.6 650 60.6
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.0e-208 729.6 649 60.4
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.4e-208 728.4 650 59.8
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 4.4e-208 728.4 647 60.1
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 9.9e-208 727.2 649 61.3
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.3e-207 726.9 650 59.7
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.8e-207 725.3 649 60.1
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 4.9e-207 724.9 643 60.7
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 8.4e-207 724.2 650 59.5
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.4e-206 722.6 663 58.7
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 4.2e-206 721.8 646 59.6
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 5.4e-206 721.5 640 59.5
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.7e-205 719.2 656 58.7
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.7e-204 716.5 644 58.5
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 6.6e-204 714.5 640 59.1
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 7.4e-203 711.1 649 58.1
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 9.6e-203 710.7 646 59.8
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 6.2e-202 708.0 648 57.7
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 6.2e-202 708.0 646 58.2
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 3.1e-201 705.7 645 58.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 9.0e-201 704.1 649 59.2
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.2e-199 699.5 531 67.4
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 4.9e-199 698.4 663 57.9
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 8.4e-199 697.6 649 57.0
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.1e-198 697.2 653 58.0
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.4e-198 696.8 664 57.1
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 5.5e-198 694.9 639 57.9
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 7.1e-198 694.5 651 58.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 2.7e-197 692.6 649 59.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.7e-197 692.6 647 56.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.1e-195 687.2 661 55.5
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.1e-195 687.2 661 55.5
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 5.6e-195 684.9 653 57.1
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.3e-194 683.7 643 56.6
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 1.6e-194 683.3 656 55.3
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 8.1e-194 681.0 672 54.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 1.1e-193 680.6 643 55.7
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 5.3e-193 678.3 644 55.9
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 9.0e-193 677.6 644 56.1
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 3.4e-192 675.6 643 56.3
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.5e-192 675.2 654 55.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 7.6e-192 674.5 651 55.5
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.0e-191 674.1 646 58.5
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 2.2e-191 672.9 650 56.2
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 6.5e-191 671.4 657 55.7
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-185 653.3 660 54.4
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 5.3e-185 651.7 645 55.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-184 650.2 660 54.1
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 3.4e-184 649.0 646 54.0
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.0e-183 647.5 646 54.0
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.7e-183 646.7 602 59.1
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 2.9e-183 646.0 541 62.5
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 3.2e-182 642.5 654 54.7
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 5.5e-182 641.7 626 56.1
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 2.1e-181 639.8 646 54.0
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 6.3e-178 628.2 647 53.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 6.3e-178 628.2 646 52.9
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 8.2e-170 601.3 688 49.7
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.4e-168 595.9 500 61.0
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 3.3e-163 579.3 555 55.3
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.5e-160 569.3 525 59.2
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.0e-156 555.8 625 51.7
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 5.2e-140 502.3 654 47.7
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 8.8e-140 501.5 587 48.6
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 9.8e-139 498.0 513 49.1
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 3.1e-137 493.0 662 45.9
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.6e-136 490.7 683 43.3
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.0e-135 488.0 583 49.9
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.3e-135 487.6 532 48.3
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.8e-133 479.9 520 46.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.4e-132 477.6 519 48.4
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 2.6e-131 473.4 379 66.2
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 6.8e-124 448.7 496 50.2
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 4.6e-112 409.5 582 44.0
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.6e-101 373.2 560 36.6
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 5.3e-76 289.7 345 51.0
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 4.1e-52 210.3 272 47.8
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 3.9e-47 193.7 121 76.0
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.2e-45 188.0 282 36.9
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.6e-43 181.8 237 44.7
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 5.5e-41 173.3 107 74.8
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.4e-39 168.7 107 72.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.8e-39 168.3 108 75.9
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-38 164.9 115 71.3
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 2.0e-35 154.8 92 79.3
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 5.0e-34 150.2 156 53.8
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.4e-30 137.1 154 49.4
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 2.2e-29 134.8 85 74.1
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 2.0e-27 128.3 131 52.7
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.7e-26 125.2 171 46.2
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-25 122.5 95 63.2
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.5e-25 121.3 83 72.3
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.3e-25 120.9 154 48.1
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 4.0e-23 114.0 79 69.6
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.7e-21 107.5 87 62.1
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-16 92.4 89 56.2
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 8.0e-16 89.7 513 22.4
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 3.0e-15 87.8 54 72.2
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 6.8e-15 86.7 101 46.5
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-14 85.5 56 67.9
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.4e-14 84.0 48 81.2
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.5e-09 68.2 240 29.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 2.5e-09 68.2 228 25.4
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 3.3e-09 67.8 90 42.2
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.6e-08 65.5 69 53.6


User provided reference genes

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