Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031343 Daucus carota HOM05D018477 ORTHO05D001154 2.9e-194 681.8 362 100.0
DCAR_027236 Daucus carota HOM05D001358 ORTHO05D001154 1.1e-68 264.6 165 84.8
DCAR_024178 Daucus carota HOM05D001358 ORTHO05D001154 4.2e-44 183.0 155 66.5
DCAR_023380 Daucus carota HOM05D000412 ORTHO05D000429 9.7e-41 171.8 128 82.0
Actinidia18534 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.4e-34 151.4 174 56.3
vmacro15363 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 5.2e-34 149.4 176 55.1
Actinidia08472 Actinidia chinensis HOM05D001358 ORTHO05D001154 9.7e-33 145.2 174 55.2
Hma1.2p1_0549F.1_g176810 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 8.2e-32 142.1 174 53.4
Rhsim02G0028000 Rhododendron simsii HOM05D001358 ORTHO05D001154 1.4e-31 141.4 176 52.3
Lj3A729G50 Lonicera japonica HOM05D001358 ORTHO05D001154 8.5e-29 132.1 177 49.7
Rhsim04G0199300 Rhododendron simsii HOM05D001358 ORTHO05D001154 2.1e-27 127.5 175 51.4
CSS0027734 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 2.7e-27 127.1 175 50.3
Actinidia40126 Actinidia chinensis HOM05D001358 ORTHO05D001154 6.1e-27 125.9 173 48.0
CSS0000128 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 8.0e-27 125.6 173 49.7
MSTRG.9962 Avicennia marina HOM05D001358 ORTHO05D001154 1.8e-26 124.4 172 49.4
COL.COLO4_21540 Corchorus olitorius HOM05D001358 ORTHO05D001154 6.8e-26 122.5 174 46.0
Sabra08G0118900 Salix brachista HOM05D001358 ORTHO05D001154 1.2e-25 121.7 175 47.4
Manes.15G031500 Manihot esculenta HOM05D001358 ORTHO05D001154 2.0e-25 120.9 173 48.6
Peaxi162Scf00520g00614 Petunia axillaris HOM05D001358 ORTHO05D001154 2.6e-25 120.6 168 48.8
Hma1.2p1_0602F.1_g187530 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 3.4e-25 120.2 173 45.7
Lj6C610G1 Lonicera japonica HOM05D001358 ORTHO05D001154 3.4e-25 120.2 173 49.1
Manes.03G174900 Manihot esculenta HOM05D001358 ORTHO05D001154 4.4e-25 119.8 173 48.6
Thecc.04G236400 Theobroma cacao HOM05D001358 ORTHO05D001154 4.4e-25 119.8 174 44.8
RcHm_v2.0_Chr4g0387371 Rosa chinensis HOM05D001358 ORTHO05D001154 5.7e-25 119.4 172 43.6
Haze_11214 Corylus avellana HOM05D001358 ORTHO05D001154 6.3e-24 115.9 173 44.5
Cc03_g04130 Coffea canephora HOM05D001358 ORTHO05D001154 1.1e-23 115.2 175 48.0
FvH4_4g00820 Fragaria vesca HOM05D001358 ORTHO05D001154 1.4e-23 114.8 172 41.9
FAN12G0899 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.4e-23 114.8 172 41.9
FAN17G3066 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.4e-23 114.8 172 42.4
Prupe.1G019100 Prunus persica HOM05D001358 ORTHO05D001154 1.4e-23 114.8 173 43.4
GSVIVG01018021001 Vitis vinifera HOM05D001358 ORTHO05D001154 1.4e-23 114.8 173 46.2
Ciclev10004441m.g Citrus clementina HOM05D001358 ORTHO05D001154 1.8e-23 114.4 174 46.0
Cfa008460 Carpinus fangiana HOM05D001358 ORTHO05D001154 2.4e-23 114.0 173 43.9
Gohir.A02G033800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.4e-23 114.0 174 44.3
QL06p001413 Quercus lobata HOM05D001358 ORTHO05D001154 2.4e-23 114.0 173 43.9
Duzib151G0531 Durio zibethinus HOM05D001358 ORTHO05D001154 7.0e-23 112.5 174 44.8
Gorai.005G044800 Gossypium raimondii HOM05D001358 ORTHO05D001154 7.0e-23 112.5 174 44.3
Potri.008G156100 Populus trichocarpa HOM05D001358 ORTHO05D001154 9.1e-23 112.1 173 45.1
Sed0021302 Sechium edule HOM05D001358 ORTHO05D001154 9.1e-23 112.1 174 44.3
Duzib212G0525 Durio zibethinus HOM05D001358 ORTHO05D001154 1.6e-22 111.3 173 43.4
Atru.chr4.2387 Acer truncatum HOM05D001358 ORTHO05D001154 2.0e-22 110.9 174 46.6
Atru.chr4.2410 Acer truncatum HOM05D001358 ORTHO05D001154 2.0e-22 110.9 174 46.6
Gohir.D02G040400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.0e-22 110.9 174 43.7
FAN22G2403 Fragaria x ananassa HOM05D001358 ORTHO05D001154 2.7e-22 110.5 172 41.3
Nitab4.5_0002406g0010 Nicotiana tabacum HOM05D001358 ORTHO05D001154 2.7e-22 110.5 179 45.8
CiPaw.01G197300 Carya illinoinensis HOM05D001358 ORTHO05D001154 4.5e-22 109.8 172 43.0
MELO3C006510.2 Cucumis melo HOM05D001358 ORTHO05D001154 1.3e-21 108.2 174 43.1
PGSC0003DMG400032257 Solanum tuberosum HOM05D001358 ORTHO05D001154 1.3e-21 108.2 180 45.6
TAR362G0329 Trochodendron aralioides HOM05D001358 ORTHO05D001154 1.3e-21 108.2 177 45.2
Potri.010G083400 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.7e-21 107.8 177 43.5
ClCG05G004950 Citrullus lanatus HOM05D001358 ORTHO05D001154 2.3e-21 107.5 174 41.4
Sopen09g031360 Solanum pennellii HOM05D001358 ORTHO05D001154 2.3e-21 107.5 180 45.0
CANSAT78G1873 Cannabis sativa HOM05D001358 ORTHO05D001154 2.9e-21 107.1 173 45.1
Sc13g0004620 Simmondsia chinensis HOM05D001358 ORTHO05D001154 2.9e-21 107.1 171 39.2
Actinidia23533 Actinidia chinensis HOM05D001358 ORTHO05D001154 3.8e-21 106.7 160 48.1
Oeu058964.1 Olea europaea HOM05D001358 ORTHO05D001154 3.8e-21 106.7 171 45.0
CsaV3_3G013010 Cucumis sativus L. HOM05D001358 ORTHO05D001154 6.5e-21 105.9 174 42.5
CAN.G1402.8 Capsicum annuum HOM05D001358 ORTHO05D001154 8.6e-21 105.5 183 44.8
Oeu042813.3 Olea europaea HOM05D001358 ORTHO05D001154 8.6e-21 105.5 170 45.3
Solyc09g082500.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 1.9e-20 104.4 182 44.0
MD13G1197800 Malus domestica HOM05D001358 ORTHO05D001154 2.5e-20 104.0 174 42.0
MSTRG.4051 Avicennia marina HOM05D001358 ORTHO05D001154 3.3e-20 103.6 171 43.3
Migut.G00370 Erythranthe guttata HOM05D001358 ORTHO05D001154 3.3e-20 103.6 182 46.2
Sed0026536 Sechium edule HOM05D001358 ORTHO05D001154 3.3e-20 103.6 173 42.2
TWI09G1240 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 5.5e-20 102.8 175 40.6
CiPaw.02G122500 Carya illinoinensis HOM05D001358 ORTHO05D001154 1.6e-19 101.3 173 42.8
Peaxi162Scf00245g01214 Petunia axillaris HOM05D001358 ORTHO05D001154 1.6e-19 101.3 161 48.4
TWI73G0388 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 2.1e-19 100.9 175 40.0
AUR62033646 Chenopodium quinoa HOM05D001358 ORTHO05D001154 2.8e-19 100.5 159 41.5
Nn1g02402 Nelumbo nucifera HOM05D001358 ORTHO05D001154 2.8e-19 100.5 176 44.9
Nitab4.5_0000085g0300 Nicotiana tabacum HOM05D001358 ORTHO05D001154 6.1e-19 99.4 159 48.4
DCAR_002372 Daucus carota HOM05D001358 ORTHO05D001154 1.0e-18 98.6 170 43.5
SGA_v2.0_scaffold191G40463 Striga asiatica HOM05D001358 ORTHO05D001154 2.3e-18 97.4 177 42.9
PSO170G2064 Papaver somniferum HOM05D001358 ORTHO05D001154 6.8e-18 95.9 157 43.9
PSO210G7202 Papaver somniferum HOM05D001358 ORTHO05D001154 6.8e-18 95.9 157 43.9
MSTRG.21868 Avicennia marina HOM05D001358 ORTHO05D001154 1.2e-17 95.1 169 40.2
MD16G1197800 Malus domestica HOM05D001358 ORTHO05D001154 1.2e-17 95.1 172 41.3
TWI53G1527 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.2e-17 95.1 177 40.1
Ah.07g204170 Amaranthus hybridus HOM05D001358 ORTHO05D001154 2.0e-17 94.4 167 40.1
Nn6g34134 Nelumbo nucifera HOM05D001358 ORTHO05D001154 4.4e-17 93.2 175 42.3
Hund12096 Selenicereus undatus HOM05D001358 ORTHO05D001154 4.4e-17 93.2 171 38.6
arahy.Tifrunner.gnm1.ann1.SA7CU8 Arachis hypogaea HOM05D001358 ORTHO05D001154 2.8e-16 90.5 172 39.5
arahy.Tifrunner.gnm1.ann1.VMK2JT Arachis hypogaea HOM05D001358 ORTHO05D001154 3.7e-16 90.1 172 39.5
Sc19g0004020 Simmondsia chinensis HOM05D001358 ORTHO05D001154 1.8e-15 87.8 171 39.2
Glyma.01G236300 Glycine max HOM05D001358 ORTHO05D001154 1.6e-14 84.7 169 37.3
Glyma.11G006900 Glycine max HOM05D001358 ORTHO05D001154 1.6e-14 84.7 169 37.3
Oeu043474.3 Olea europaea HOM05D001358 ORTHO05D001154 1.6e-14 84.7 179 42.5
LjContig00408g0005420 Lotus japonicus HOM05D001358 ORTHO05D001154 2.0e-14 84.3 172 38.4
Lsat_1_v5_gn_5_104381 Lactuca sativa HOM05D001358 ORTHO05D001154 3.5e-14 83.6 173 42.2
Psat2g190640 Pisum sativum HOM05D001358 ORTHO05D001154 3.5e-14 83.6 169 38.5
DCAR_031562 Daucus carota HOM05D018477 ORTHO05D177054 5.9e-14 82.8 46 87.0
Aa31LG9G2600 Aethionema arabicum HOM05D001358 ORTHO05D001154 7.8e-14 82.4 160 41.2
TPR.G37873 Trifolium pratense HOM05D001358 ORTHO05D001154 7.8e-14 82.4 172 38.4
Oeu010307.1 Olea europaea HOM05D001358 ORTHO05D001154 1.3e-13 81.6 173 43.9
GSVIVG01021837001 Vitis vinifera HOM05D001358 ORTHO05D001154 1.3e-13 81.6 173 38.7
PGR142G0675 Punica granatum HOM05D001358 ORTHO05D001154 1.7e-13 81.3 177 36.7
SHI00498 Sapria himalayana HOM05D001358 ORTHO05D001154 1.7e-13 81.3 179 40.2
DCAR_020213 Daucus carota HOM05D018477 ORTHO05D177114 2.3e-13 80.9 45 91.1
Eucgr.B01031 Eucalyptus grandis HOM05D001358 ORTHO05D001154 2.3e-13 80.9 176 36.4
Dinv11533 Davidia involucrata HOM05D001358 ORTHO05D001154 5.0e-13 79.7 187 39.0
DCAR_002775 Daucus carota HOM05D018477 ORTHO05D176074 6.6e-13 79.3 46 87.0
DCAR_024666 Daucus carota HOM05D018477 ORTHO05D177572 6.6e-13 79.3 47 85.1
ECA234G1550 Erigeron canadensis HOM05D001358 ORTHO05D001154 6.6e-13 79.3 173 41.6
HanXRQChr16g0513781 Helianthus annuus HOM05D001358 ORTHO05D001154 8.6e-13 79.0 174 42.5
Ca_24408_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 1.5e-12 78.2 174 35.1
HanXRQChr10g0294761 Helianthus annuus HOM05D001358 ORTHO05D001154 1.5e-12 78.2 169 44.4
C01p28370 Brassica napus HOM05D001358 ORTHO05D001154 3.3e-12 77.0 156 39.7
BolC1t02766H Brassica oleracea HOM05D001358 ORTHO05D001154 3.3e-12 77.0 156 39.7
DCAR_028801 Daucus carota HOM05D018477 ORTHO05D177250 5.6e-12 76.3 46 84.8
SalBow2G0747 Salvia bowleyana HOM05D001358 ORTHO05D001154 7.3e-12 75.9 167 40.1
Medtr5g006530 Medicago truncatula HOM05D001358 ORTHO05D001154 9.5e-12 75.5 171 36.3
Carub.0007s2737 Capsella rubella HOM05D001358 ORTHO05D001154 1.6e-11 74.7 159 41.5
Dinv17768 Davidia involucrata HOM05D001358 ORTHO05D001154 2.1e-11 74.3 171 34.5
Phvul.007G060500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 6.1e-11 72.8 167 34.1
CARHR216030 Cardamine hirsuta HOM05D001358 ORTHO05D001154 8.0e-11 72.4 161 39.8
VMungo1215G0998 Vigna mungo HOM05D001358 ORTHO05D001154 1.4e-10 71.6 169 33.1
BcaNung00335 Brassica carinata HOM05D001358 ORTHO05D001154 1.8e-10 71.2 155 40.6
VMungo0720G2732 Vigna mungo HOM05D001358 ORTHO05D001154 1.8e-10 71.2 167 34.1
AL7G41150 Arabidopsis lyrata HOM05D001358 ORTHO05D001154 2.3e-10 70.9 161 42.9
Lalb_Chr09g0319961 Lupinus albus HOM05D001358 ORTHO05D001154 2.3e-10 70.9 169 33.7
Os07g0176200 Oryza sativa ssp. japonica HOM05D001358 ORTHO05D001154 5.2e-10 69.7 173 33.5
AT4G14770 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 2.6e-09 67.4 160 39.4
AL3G37100 Arabidopsis lyrata HOM05D001358 ORTHO05D001154 3.4e-09 67.0 147 38.1
BcaB03g14650 Brassica carinata HOM05D001358 ORTHO05D001154 4.4e-09 66.6 142 38.7
SalBow3G1593 Salvia bowleyana HOM05D001358 ORTHO05D001154 4.4e-09 66.6 173 37.6
SalBow6G5001 Salvia bowleyana HOM05D001358 ORTHO05D001154 5.8e-09 66.2 174 38.5
Glyma.10G245500 Glycine max HOM05D001358 ORTHO05D001154 7.5e-09 65.9 167 33.5
Phvul.002G043700 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 9.8e-09 65.5 169 33.7
AT3G22780 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 1.3e-08 65.1 144 36.8
Aqoxy2G03440 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 4.9e-08 63.2 183 37.2
Carub.0003s2290 Capsella rubella HOM05D001358 ORTHO05D001154 6.4e-08 62.8 144 37.5
THA.LOC104827552 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 8.3e-08 62.4 155 37.4
A01p22800 Brassica napus HOM05D001358 ORTHO05D001154 1.1e-07 62.0 155 36.1
THA.LOC104808570 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 1.1e-07 62.0 167 35.9
Eucgr.H03425 Eucalyptus grandis HOM05D001358 ORTHO05D001154 1.4e-07 61.6 206 30.6
Lalb_Chr05g0211051 Lupinus albus HOM05D001358 ORTHO05D001154 1.4e-07 61.6 170 34.1
Sp7g12900 Schrenkiella parvula HOM05D001358 ORTHO05D001154 1.4e-07 61.6 165 35.2
BcaB06g26393 Brassica carinata HOM05D001358 ORTHO05D001154 1.9e-07 61.2 146 37.0
Sp3g20480 Schrenkiella parvula HOM05D001358 ORTHO05D001154 1.9e-07 61.2 145 37.2
BcaC05g28016 Brassica carinata HOM05D001358 ORTHO05D001154 2.4e-07 60.8 145 37.2
C05p40330 Brassica napus HOM05D001358 ORTHO05D001154 2.4e-07 60.8 145 37.2
BolC5t32774H Brassica oleracea HOM05D001358 ORTHO05D001154 2.4e-07 60.8 145 37.2
CARHR098610 Cardamine hirsuta HOM05D001358 ORTHO05D001154 2.4e-07 60.8 150 38.7
CARHR098620 Cardamine hirsuta HOM05D001358 ORTHO05D001154 7.0e-07 59.3 148 39.2
CARHR221300 Cardamine hirsuta HOM05D001358 ORTHO05D001154 7.0e-07 59.3 157 36.9
DCAR_026959 Daucus carota HOM05D000412 ORTHO05D000429 7.0e-07 59.3 122 41.8
A05p25970 Brassica napus HOM05D001358 ORTHO05D001154 1.2e-06 58.5 149 36.2
Migut.N00204 Erythranthe guttata HOM05D001358 ORTHO05D001154 1.6e-06 58.2 165 35.2
Thhalv10024624m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 1.6e-06 58.2 161 35.4
THA.LOC104803136 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 1.6e-06 58.2 155 35.5
BraA05t21481Z Brassica rapa HOM05D001358 ORTHO05D001154 2.0e-06 57.8 149 36.2
Thhalv10020174m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 3.5e-06 57.0 145 35.9
Potri.005G051100 Populus trichocarpa HOM05D001358 ORTHO05D001154 7.8e-06 55.8 171 33.3


User provided reference genes

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