Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 3.7e-160 568.2 286 100.0
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 6.0e-110 401.4 285 69.5
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.3e-109 400.2 271 73.4
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.0e-109 399.1 270 73.0
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 3.9e-109 398.7 286 70.6
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.5e-108 396.7 273 73.6
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 7.3e-108 394.4 271 71.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.2e-107 393.7 282 69.5
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.8e-107 392.5 287 68.6
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 3.6e-107 392.1 287 69.3
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 1.1e-106 390.6 287 68.6
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.2e-105 387.1 271 70.5
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 5.8e-105 384.8 290 68.3
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 5.8e-105 384.8 277 71.5
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 1.3e-104 383.6 289 67.5
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 1.3e-104 383.6 282 69.1
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 4.9e-104 381.7 271 69.7
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 6.4e-104 381.3 286 68.5
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.1e-103 380.6 271 69.7
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.4e-103 380.2 294 65.6
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.4e-103 380.2 277 71.5
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.4e-103 380.2 288 66.7
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.9e-103 379.8 289 67.8
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 1.9e-103 379.8 282 68.8
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 4.1e-103 378.6 281 66.2
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 5.4e-103 378.3 287 69.0
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 5.4e-103 378.3 271 70.1
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 7.1e-103 377.9 291 68.4
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 2.7e-102 375.9 273 69.2
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.7e-101 373.2 269 71.0
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 2.3e-101 372.9 278 68.0
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 3.9e-101 372.1 288 67.7
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.1e-100 370.5 290 67.6
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.1e-100 370.5 272 70.6
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 1.9e-100 369.8 272 67.6
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 2.5e-100 369.4 286 67.1
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.5e-100 369.4 286 67.1
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 7.3e-100 367.9 275 68.4
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 2.1e-99 366.3 247 72.9
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 2.8e-99 365.9 277 66.8
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 6.2e-99 364.8 276 67.0
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 6.2e-99 364.8 274 68.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 1.1e-98 364.0 245 75.1
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.1e-98 364.0 287 66.6
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.8e-98 363.2 285 66.7
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 8.9e-98 360.9 286 65.4
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.2e-97 360.5 286 65.7
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 2.6e-97 359.4 271 65.3
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.3e-96 357.1 286 65.0
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 2.9e-96 355.9 323 57.9
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 4.9e-96 355.1 294 63.3
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 6.4e-96 354.8 279 64.5
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 1.1e-95 354.0 279 64.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.9e-95 353.2 277 64.3
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.9e-95 353.2 277 64.3
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 3.2e-95 352.4 262 66.8
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.6e-94 350.1 280 61.8
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 2.7e-94 349.4 279 63.4
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 4.6e-94 348.6 277 62.5
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 6.0e-94 348.2 309 60.5
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 6.0e-94 348.2 316 58.9
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.3e-93 347.1 316 58.2
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 2.3e-93 346.3 268 64.6
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.9e-92 343.2 283 60.8
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 2.5e-92 342.8 267 64.4
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 3.3e-92 342.4 280 60.7
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 7.3e-92 341.3 272 63.2
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 9.6e-92 340.9 272 62.9
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.8e-91 339.3 277 61.0
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 6.2e-91 338.2 272 62.5
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 1.4e-90 337.0 262 67.9
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 3.1e-90 335.9 280 63.9
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 3.1e-90 335.9 297 58.6
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 5.2e-90 335.1 279 61.6
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 1.3e-88 330.5 210 76.2
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 3.9e-85 318.9 245 63.7
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.5e-84 316.2 209 75.1
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 4.8e-83 312.0 277 57.0
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.8e-82 310.1 238 67.6
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 2.4e-82 309.7 246 62.6
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 4.4e-81 305.4 286 57.7
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 4.4e-81 305.4 284 60.6
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 1.9e-79 300.1 209 67.5
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 2.4e-79 299.7 197 72.6
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.0e-77 294.3 226 65.9
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.3e-77 293.9 230 61.3
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.8e-75 286.2 234 61.1
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.9e-72 276.2 194 67.0
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 5.5e-71 271.9 257 54.5
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 6.9e-66 255.0 183 71.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.5e-65 253.8 225 53.8
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.1e-63 247.7 153 79.7
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 7.4e-60 235.0 194 60.8
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 2.5e-55 219.9 209 56.9
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 9.3e-55 218.0 133 79.7
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.6e-54 217.2 166 66.3
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-53 213.8 166 68.1
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 9.7e-52 208.0 208 55.8
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 5.9e-49 198.7 163 62.6
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 2.9e-48 196.4 182 55.5
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 5.5e-47 192.2 305 39.7
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 3.9e-45 186.0 173 55.5
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 3.3e-44 183.0 239 46.0
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.2e-39 165.2 141 58.9
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 4.7e-38 162.5 100 75.0
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 6.7e-37 158.7 102 73.5
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.7e-35 154.1 127 61.4
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 4.5e-33 146.0 102 65.7
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 7.7e-33 145.2 132 53.8
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 4.0e-29 132.9 98 68.4
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 5.2e-29 132.5 104 60.6
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 2.0e-28 130.6 90 68.9
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 6.3e-27 125.6 97 59.8
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 3.1e-26 123.2 101 62.4
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 9.4e-23 111.7 122 53.3
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 6.1e-22 109.0 103 53.4
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.0e-21 108.2 233 33.9
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 4.4e-20 102.8 79 65.8
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 9.1e-18 95.1 86 52.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 5.0e-16 89.4 68 60.3
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 5.0e-16 89.4 50 82.0
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-16 88.6 96 51.0
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 4.2e-15 86.3 65 63.1
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 1.0e-13 81.6 65 61.5
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.7e-11 74.3 54 66.7


User provided reference genes

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