Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031270 Daucus carota HOM05D011804 ORTHO05D176764 3.9e-54 214.5 107 100.0
DCAR_031259 Daucus carota HOM05D011804 ORTHO05D176302 3.1e-51 204.9 111 94.6
DCAR_031260 Daucus carota HOM05D011804 ORTHO05D176314 3.1e-51 204.9 111 94.6
DCAR_031269 Daucus carota HOM05D011804 ORTHO05D015090 1.5e-29 132.9 172 50.0
DCAR_009534 Daucus carota HOM05D001927 ORTHO05D177657 3.9e-14 81.6 48 85.4
DCAR_027432 Daucus carota HOM05D011804 ORTHO05D015090 1.7e-09 66.2 36 88.9
DCAR_031261 Daucus carota HOM05D011804 ORTHO05D015090 1.7e-09 66.2 36 88.9
DCAR_031983 Daucus carota HOM05D011804 ORTHO05D015090 1.7e-09 66.2 36 88.9
DCAR_031985 Daucus carota HOM05D011804 ORTHO05D015090 1.7e-09 66.2 36 88.9
DCAR_031262 Daucus carota HOM05D011804 ORTHO05D015090 1.4e-08 63.2 36 86.1
MSTRG.2741 Avicennia marina HOM05D001927 ORTHO05D001972 5.5e-08 61.2 80 46.2
Actinidia22908 Actinidia chinensis HOM05D001927 ORTHO05D001972 1.6e-07 59.7 83 43.4
Cpa.g.sc535.2 Carica papaya HOM05D001927 ORTHO05D001972 2.1e-07 59.3 62 50.0
CSS0009793 Camellia sinensis var. sinensis HOM05D001927 ORTHO05D001972 4.6e-07 58.2 45 62.2
MD10G1139400 Malus domestica HOM05D001927 ORTHO05D001972 6.0e-07 57.8 60 53.3
MBI05_g12023_MAGBIO Magnolia biondii HOM05D001927 ORTHO05D001972 1.0e-06 57.0 57 54.4
Medtr8g073920 Medicago truncatula HOM05D001927 ORTHO05D001972 1.0e-06 57.0 62 48.4
Nitab4.5_0000702g0110 Nicotiana tabacum HOM05D001927 ORTHO05D001972 1.0e-06 57.0 87 43.7
Solyc02g082800.3 Solanum lycopersicum HOM05D001927 ORTHO05D001972 1.0e-06 57.0 65 49.2
Sopen02g027600 Solanum pennellii HOM05D001927 ORTHO05D001972 1.0e-06 57.0 65 49.2
PGSC0003DMG400001571 Solanum tuberosum HOM05D001927 ORTHO05D001972 1.0e-06 57.0 65 49.2
Actinidia17381 Actinidia chinensis HOM05D001927 ORTHO05D001972 1.3e-06 56.6 46 60.9
CDE02G2418 Ceratophyllum demersum HOM05D001927 ORTHO05D001972 1.3e-06 56.6 46 63.0
CDE04G0090 Ceratophyllum demersum HOM05D001927 ORTHO05D001972 1.3e-06 56.6 46 63.0
MD05G1134300 Malus domestica HOM05D001927 ORTHO05D001972 1.3e-06 56.6 60 51.7
Sed0010207 Sechium edule HOM05D001927 ORTHO05D001972 1.3e-06 56.6 64 51.6
Nitab4.5_0006877g0010 Nicotiana tabacum HOM05D001927 ORTHO05D001972 1.8e-06 56.2 88 43.2
MSTRG.19947 Avicennia marina HOM05D001927 ORTHO05D001972 2.3e-06 55.8 92 40.2
Migut.H02201 Erythranthe guttata HOM05D001927 ORTHO05D001972 2.3e-06 55.8 47 57.4
Eucgr.G01858 Eucalyptus grandis HOM05D001927 ORTHO05D001972 2.3e-06 55.8 92 41.3
Migut.B00013 Erythranthe guttata HOM05D001927 ORTHO05D001972 3.0e-06 55.5 98 41.8
Os03g0131300 Oryza sativa ssp. japonica HOM05D001927 ORTHO05D001972 3.0e-06 55.5 60 46.7
Rhsim10G0197500 Rhododendron simsii HOM05D001927 ORTHO05D001972 3.0e-06 55.5 43 65.1
arahy.Tifrunner.gnm1.ann1.4G73DJ Arachis hypogaea HOM05D001927 ORTHO05D001972 3.9e-06 55.1 92 40.2
arahy.Tifrunner.gnm1.ann1.JPCM7H Arachis hypogaea HOM05D001927 ORTHO05D001972 3.9e-06 55.1 92 40.2
MSTRG.5470 Avicennia marina HOM05D001927 ORTHO05D001972 3.9e-06 55.1 54 55.6
QL06p052823 Quercus lobata HOM05D001927 ORTHO05D001972 3.9e-06 55.1 78 43.6
QL06p053755 Quercus lobata HOM05D001927 ORTHO05D001972 3.9e-06 55.1 78 43.6
Sed0007443 Sechium edule HOM05D001927 ORTHO05D001972 3.9e-06 55.1 64 51.6
THA.LOC104819722 Tarenaya hassleriana HOM05D001927 ORTHO05D001972 3.9e-06 55.1 87 42.5
Zm00001eb393840 Zea mays HOM05D001927 ORTHO05D001972 3.9e-06 55.1 46 60.9
Duzib187G0987 Durio zibethinus HOM05D001927 ORTHO05D001972 5.1e-06 54.7 82 43.9
Manes.02G113000 Manihot esculenta HOM05D001927 ORTHO05D001972 5.1e-06 54.7 54 53.7
Oeu021982.1 Olea europaea HOM05D001927 ORTHO05D001972 5.1e-06 54.7 61 47.5
Sabra05G0082800 Salix brachista HOM05D001927 ORTHO05D001972 5.1e-06 54.7 97 39.2
SGA_v2.0_scaffold32G13343 Striga asiatica HOM05D001927 ORTHO05D001972 5.1e-06 54.7 59 50.8
VMungo0251G2413 Vigna mungo HOM05D001927 ORTHO05D001972 5.1e-06 54.7 44 61.4
CAN.G1159.20 Capsicum annuum HOM05D001927 ORTHO05D001972 6.7e-06 54.3 65 47.7
Glyma.16G118400 Glycine max HOM05D001927 ORTHO05D001972 6.7e-06 54.3 44 59.1
Gohir.A03G209500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.7e-06 54.3 43 65.1
Gohir.D02G231200 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.7e-06 54.3 43 65.1
Gorai.005G258800 Gossypium raimondii HOM05D001927 ORTHO05D001972 6.7e-06 54.3 43 65.1
Lj2g0024598 Lotus japonicus HOM05D001927 ORTHO05D001972 6.7e-06 54.3 96 38.5
Lalb_Chr16g0377241 Lupinus albus HOM05D001927 ORTHO05D001972 6.7e-06 54.3 44 61.4
Mapoly0065s0073 Marchantia polymorpha HOM05D001927 ORTHO05D001972 6.7e-06 54.3 45 57.8
Phvul.003G269300 Phaseolus vulgaris HOM05D001927 ORTHO05D001972 6.7e-06 54.3 44 59.1
Prupe.8G178100 Prunus persica HOM05D001927 ORTHO05D001972 6.7e-06 54.3 61 49.2
Sabra04G0138400 Salix brachista HOM05D001927 ORTHO05D001972 6.7e-06 54.3 64 48.4
TWI31G0016 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 6.7e-06 54.3 61 50.8
TWI75G1468 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 6.7e-06 54.3 61 50.8
vmacro20528 Vaccinium macrocarpon HOM05D001927 ORTHO05D001972 6.7e-06 54.3 43 62.8
HPP92_002452 Vanilla planifolia HOM05D001927 ORTHO05D001972 6.7e-06 54.3 85 38.8
arahy.Tifrunner.gnm1.ann1.IUYP8I Arachis hypogaea HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
arahy.Tifrunner.gnm1.ann1.P0RRHQ Arachis hypogaea HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Cpa.g.sc20.203 Carica papaya HOM05D001927 ORTHO05D001972 8.7e-06 53.9 88 46.6
Ca_22419_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Ca_24968_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
ClCG02G003510 Citrullus lanatus HOM05D001927 ORTHO05D001972 8.7e-06 53.9 46 60.9
Cc07_g11700 Coffea canephora HOM05D001927 ORTHO05D001972 8.7e-06 53.9 43 62.8
DCAR_015664 Daucus carota HOM05D001927 ORTHO05D001972 8.7e-06 53.9 46 60.9
Glyma.01G159500 Glycine max HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Glyma.11G084700 Glycine max HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Lj9A406G55 Lonicera japonica HOM05D001927 ORTHO05D001972 8.7e-06 53.9 46 60.9
Lalb_Chr05g0211891 Lupinus albus HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Oeu010279.1 Olea europaea HOM05D001927 ORTHO05D001972 8.7e-06 53.9 46 60.9
Os10g0542200 Oryza sativa ssp. japonica HOM05D001927 ORTHO05D001972 8.7e-06 53.9 86 44.2
Phvul.002G115300 Phaseolus vulgaris HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Psat0s943g0080 Pisum sativum HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Psat4g104080 Pisum sativum HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Sabra09G0129800 Salix brachista HOM05D001927 ORTHO05D001972 8.7e-06 53.9 55 52.7
Thecc.01G006700 Theobroma cacao HOM05D001927 ORTHO05D001972 8.7e-06 53.9 43 60.5
TPR.G25116 Trifolium pratense HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
VMungo1215G1850 Vigna mungo HOM05D001927 ORTHO05D001972 8.7e-06 53.9 44 59.1
Zm00001eb022400 Zea mays HOM05D001927 ORTHO05D001972 8.7e-06 53.9 46 58.7


User provided reference genes

Program Settings