Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031222 Daucus carota HOM05D006538 ORTHO05D008305 4.6e-52 207.6 104 100.0
DCAR_004597 Daucus carota HOM05D006538 ORTHO05D008305 3.9e-19 98.2 57 77.2
DCAR_004598 Daucus carota HOM05D006538 ORTHO05D008305 3.9e-19 98.2 57 78.9
Dinv28856 Davidia involucrata HOM05D006538 ORTHO05D008305 1.4e-13 79.7 60 65.0
Oeu040678.1 Olea europaea HOM05D006538 ORTHO05D008305 1.9e-13 79.3 61 62.3
Oeu062962.1 Olea europaea HOM05D006538 ORTHO05D008305 3.2e-13 78.6 58 63.8
Potri.003G082100 Populus trichocarpa HOM05D006538 ORTHO05D008305 4.6e-12 74.7 57 59.6
Hund14499 Selenicereus undatus HOM05D006538 ORTHO05D008305 6.1e-12 74.3 55 60.0
MSTRG.4612 Avicennia marina HOM05D006538 ORTHO05D008305 1.8e-11 72.8 57 61.4
Ciclev10020680m.g Citrus clementina HOM05D006538 ORTHO05D008305 1.8e-11 72.8 59 59.3
MSTRG.9337 Avicennia marina HOM05D006538 ORTHO05D008305 2.3e-11 72.4 59 55.9
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 5.1e-11 71.2 50 68.0
Peaxi162Scf00446g00414 Petunia axillaris HOM05D006538 ORTHO05D008305 5.1e-11 71.2 60 55.0
Nitab4.5_0006328g0020 Nicotiana tabacum HOM05D006538 ORTHO05D008305 6.7e-11 70.9 59 57.6
Peaxi162Scf00102g00825 Petunia axillaris HOM05D006538 ORTHO05D008305 6.7e-11 70.9 57 63.2
RcHm_v2.0_Chr7g0204981 Rosa chinensis HOM05D006538 ORTHO05D008305 6.7e-11 70.9 55 58.2
Sabra01G0122500 Salix brachista HOM05D006538 ORTHO05D008305 6.7e-11 70.9 57 57.9
Sc07g0009110 Simmondsia chinensis HOM05D006538 ORTHO05D008305 6.7e-11 70.9 57 54.4
EL10Ac5g12294 Beta vulgaris HOM05D006538 ORTHO05D008305 8.8e-11 70.5 59 55.9
PGSC0003DMG400026254 Solanum tuberosum HOM05D006538 ORTHO05D008305 8.8e-11 70.5 71 49.3
Manes.02G043800 Manihot esculenta HOM05D006538 ORTHO05D008305 1.5e-10 69.7 57 63.2
Nitab4.5_0006594g0020 Nicotiana tabacum HOM05D006538 ORTHO05D008305 1.5e-10 69.7 58 56.9
Nitab4.5_0000185g0210 Nicotiana tabacum HOM05D006538 ORTHO05D008305 2.0e-10 69.3 58 55.2
QL12p009381 Quercus lobata HOM05D006538 ORTHO05D008305 2.0e-10 69.3 57 57.9
Hund11328 Selenicereus undatus HOM05D006538 ORTHO05D008305 2.0e-10 69.3 59 55.9
PGSC0003DMG400020489 Solanum tuberosum HOM05D006538 ORTHO05D008305 2.5e-10 68.9 59 57.6
Nitab4.5_0000500g0020 Nicotiana tabacum HOM05D006538 ORTHO05D008305 3.3e-10 68.6 67 49.3
Solyc08g007210.4 Solanum lycopersicum HOM05D006538 ORTHO05D008305 3.3e-10 68.6 59 57.6
Sopen08g003160 Solanum pennellii HOM05D006538 ORTHO05D008305 3.3e-10 68.6 59 57.6
Migut.D01605 Erythranthe guttata HOM05D006538 ORTHO05D008305 4.3e-10 68.2 74 48.6
QL12p009385 Quercus lobata HOM05D006538 ORTHO05D008305 4.3e-10 68.2 57 57.9
CiPaw.11G069200 Carya illinoinensis HOM05D006538 ORTHO05D008305 5.7e-10 67.8 60 56.7
Rhsim07G0118000 Rhododendron simsii HOM05D006538 ORTHO05D008305 5.7e-10 67.8 55 60.0
EL10Ac5g12293 Beta vulgaris HOM05D006538 ORTHO05D008305 7.4e-10 67.4 58 55.2
FvH4_5g20090 Fragaria vesca HOM05D006538 ORTHO05D008305 7.4e-10 67.4 57 52.6
FAN08G0892 Fragaria x ananassa HOM05D006538 ORTHO05D008305 7.4e-10 67.4 57 52.6
FAN18G4265 Fragaria x ananassa HOM05D006538 ORTHO05D008305 7.4e-10 67.4 57 52.6
Potri.001G152500 Populus trichocarpa HOM05D006538 ORTHO05D008305 7.4e-10 67.4 57 57.9
Thecc.03G243600 Theobroma cacao HOM05D006538 ORTHO05D008305 7.4e-10 67.4 55 58.2
TWI60G0912 Tripterygium wilfordii HOM05D006538 ORTHO05D008305 7.4e-10 67.4 55 56.4
COL.COLO4_21681 Corchorus olitorius HOM05D006538 ORTHO05D008305 9.7e-10 67.0 61 55.7
Gohir.D11G027200 Gossypium hirsutum HOM05D006538 ORTHO05D008305 1.3e-09 66.6 59 59.3
CSS0033598 Camellia sinensis var. sinensis HOM05D006538 ORTHO05D008305 2.2e-09 65.9 59 54.2
Migut.D01281 Erythranthe guttata HOM05D006538 ORTHO05D008305 2.2e-09 65.9 77 44.2
CSS0044996 Camellia sinensis var. sinensis HOM05D006538 ORTHO05D008305 2.8e-09 65.5 57 56.1
CARHR210430 Cardamine hirsuta HOM05D006538 ORTHO05D008305 2.8e-09 65.5 54 53.7
Gohir.A08G165850 Gossypium hirsutum HOM05D006538 ORTHO05D008305 2.8e-09 65.5 55 56.4
Gohir.D08G184700 Gossypium hirsutum HOM05D006538 ORTHO05D008305 2.8e-09 65.5 55 56.4
Gorai.004G194000 Gossypium raimondii HOM05D006538 ORTHO05D008305 2.8e-09 65.5 55 56.4
SalBow1G7537 Salvia bowleyana HOM05D006538 ORTHO05D008305 3.7e-09 65.1 57 56.1
Atru.chr9.1232 Acer truncatum HOM05D006538 ORTHO05D008305 4.8e-09 64.7 64 54.7
Haze_22481 Corylus avellana HOM05D006538 ORTHO05D008305 4.8e-09 64.7 58 58.6
Solyc08g078030.4 Solanum lycopersicum HOM05D006538 ORTHO05D008305 4.8e-09 64.7 62 53.2
Sopen08g026540 Solanum pennellii HOM05D006538 ORTHO05D008305 4.8e-09 64.7 62 53.2
Ah.12g054100 Amaranthus hybridus HOM05D006538 ORTHO05D008305 6.3e-09 64.3 55 50.9
Phvul.002G000900 Phaseolus vulgaris HOM05D006538 ORTHO05D008305 6.3e-09 64.3 62 46.8
QL12p009454 Quercus lobata HOM05D006538 ORTHO05D008305 8.2e-09 63.9 59 54.2
Sabra03G0052900 Salix brachista HOM05D006538 ORTHO05D008305 1.1e-08 63.5 57 50.9
Sp6g39700 Schrenkiella parvula HOM05D006538 ORTHO05D008305 1.1e-08 63.5 60 53.3
Cc08_g11520 Coffea canephora HOM05D006538 ORTHO05D008305 1.8e-08 62.8 65 50.8
QL12p009487 Quercus lobata HOM05D006538 ORTHO05D008305 1.8e-08 62.8 57 56.1
Aa31LG9G15090 Aethionema arabicum HOM05D006538 ORTHO05D008305 2.4e-08 62.4 55 56.4
AT5G02890 Arabidopsis thaliana HOM05D006538 ORTHO05D008305 2.4e-08 62.4 58 53.4
BcaB05g21861 Brassica carinata HOM05D006538 ORTHO05D008305 2.4e-08 62.4 67 50.7
BcaC03g13041 Brassica carinata HOM05D006538 ORTHO05D008305 4.1e-08 61.6 66 48.5
BcaC06g32017 Brassica carinata HOM05D006538 ORTHO05D008305 4.1e-08 61.6 59 50.8
BraA02t04734Z Brassica rapa HOM05D006538 ORTHO05D008305 4.1e-08 61.6 59 50.8
C02p00710 Brassica napus HOM05D006538 ORTHO05D008305 6.9e-08 60.8 66 48.5
BolC2t06069H Brassica oleracea HOM05D006538 ORTHO05D008305 6.9e-08 60.8 66 48.5
Lalb_Chr16g0379401 Lupinus albus HOM05D006538 ORTHO05D008305 6.9e-08 60.8 64 50.0
GSVIVG01007346001 Vitis vinifera HOM05D006538 ORTHO05D008305 6.9e-08 60.8 59 49.2
Medtr5g013270 Medicago truncatula HOM05D006538 ORTHO05D008305 9.1e-08 60.5 59 49.2
vmacro14132 Vaccinium macrocarpon HOM05D006538 ORTHO05D008305 9.1e-08 60.5 55 52.7
AL6G12170 Arabidopsis lyrata HOM05D006538 ORTHO05D008305 1.2e-07 60.1 59 54.2
BraA02t04736Z Brassica rapa HOM05D006538 ORTHO05D008305 2.0e-07 59.3 58 50.0
AUR62007149 Chenopodium quinoa HOM05D006538 ORTHO05D008305 2.6e-07 58.9 93 41.9
Thhalv10013950m.g Eutrema salsugineum HOM05D006538 ORTHO05D008305 2.6e-07 58.9 66 50.0
THA.LOC104812733 Tarenaya hassleriana HOM05D006538 ORTHO05D008305 2.6e-07 58.9 54 51.9
BcaB01g05868 Brassica carinata HOM05D006538 ORTHO05D008305 3.4e-07 58.5 60 48.3
C03p01240 Brassica napus HOM05D006538 ORTHO05D008305 3.4e-07 58.5 60 48.3
C09p73780 Brassica napus HOM05D006538 ORTHO05D008305 3.4e-07 58.5 59 49.2
BolC3t12683H Brassica oleracea HOM05D006538 ORTHO05D008305 3.4e-07 58.5 60 48.3
BcaB05g21862 Brassica carinata HOM05D006538 ORTHO05D008305 5.9e-07 57.8 58 53.4
BraA10t45323Z Brassica rapa HOM05D006538 ORTHO05D008305 7.7e-07 57.4 59 47.5
FAN13G3305 Fragaria x ananassa HOM05D006538 ORTHO05D008305 1.3e-06 56.6 65 44.6
A10p32860 Brassica napus HOM05D006538 ORTHO05D008305 2.2e-06 55.8 59 47.5
Carub.0006s0170 Capsella rubella HOM05D006538 ORTHO05D008305 2.2e-06 55.8 62 45.2
arahy.Tifrunner.gnm1.ann1.35ICEA Arachis hypogaea HOM05D006538 ORTHO05D008305 2.9e-06 55.5 60 48.3
arahy.Tifrunner.gnm1.ann1.C9ERVU Arachis hypogaea HOM05D006538 ORTHO05D008305 2.9e-06 55.5 60 48.3
Glyma.11G037200 Glycine max HOM05D006538 ORTHO05D008305 2.9e-06 55.5 55 47.3
A03p00960 Brassica napus HOM05D006538 ORTHO05D008305 5.0e-06 54.7 60 46.7
BraA03t09478Z Brassica rapa HOM05D006538 ORTHO05D008305 5.0e-06 54.7 60 46.7
Eucgr.D02122 Eucalyptus grandis HOM05D006538 ORTHO05D008305 5.0e-06 54.7 60 45.0
Gorai.007G029700 Gossypium raimondii HOM05D006538 ORTHO05D008305 6.5e-06 54.3 45 57.8
unitig_61.g26373 Utricularia gibba HOM05D006538 ORTHO05D008305 8.5e-06 53.9 57 49.1


User provided reference genes

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