Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1837.0 909 100.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1361.3 911 74.8
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 911 75.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 911 74.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1347.8 911 74.3
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 911 74.5
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1341.3 911 73.8
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 911 73.2
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 903 74.8
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 900 75.1
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 911 73.8
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1331.6 911 73.7
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 910 73.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 911 72.8
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 911 73.5
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 912 73.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 941 72.7
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 913 73.2
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 911 73.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 911 72.9
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 911 73.7
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1320.1 932 72.5
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1320.1 987 69.5
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 911 73.0
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1318.1 911 72.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 911 72.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 911 72.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1316.2 911 72.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 911 72.1
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 911 72.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 932 72.9
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 911 72.8
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 912 73.6
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 1039 66.5
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 911 72.8
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 918 72.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 911 71.9
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1302.0 912 72.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 913 72.7
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 913 71.6
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1291.9 911 72.4
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 912 70.7
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 911 71.5
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 911 72.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1289.2 911 71.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1288.5 912 71.5
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 912 71.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 911 71.7
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 911 70.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 912 71.6
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 911 71.2
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 911 71.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 911 70.9
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 911 71.0
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1277.7 943 69.8
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1276.9 914 70.4
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1276.2 912 70.9
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1276.2 911 70.9
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 914 71.1
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1272.7 911 70.8
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 911 71.0
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 911 71.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1267.7 912 70.6
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1267.3 911 70.1
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 920 70.5
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1264.2 916 69.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1263.1 920 70.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1262.7 912 71.1
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1261.1 911 70.1
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1260.4 920 70.2
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1260.0 912 70.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1258.8 911 69.4
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1256.9 936 69.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 914 69.4
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1251.1 911 70.4
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1249.2 900 70.8
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1246.9 912 70.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1242.6 838 74.2
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 977 65.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1226.8 922 68.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 837 73.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1218.8 984 65.0
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1216.1 896 69.3
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1212.2 854 71.5
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 901 68.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 915 68.1
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 824 73.4
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1176.0 841 71.3
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1170.2 911 66.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1167.1 929 63.5
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1162.1 915 66.9
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1157.9 851 69.7
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 912 63.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1141.3 867 67.6
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1135.6 912 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1109.7 896 63.2
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1107.8 921 61.8
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1107.8 911 63.8
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1085.5 821 66.5
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1082.4 925 60.4
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 6.2e-312 1074.3 758 71.6
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 3.0e-309 1065.1 912 61.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.1e-306 1056.6 920 59.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.0e-304 1048.5 912 59.3
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 1.5e-303 1046.2 770 68.8
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 3.3e-295 1018.5 636 79.1
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.2e-274 948.3 918 57.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.0e-236 823.2 715 61.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 5.3e-221 771.9 615 63.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.3e-211 740.7 586 65.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-209 734.2 418 85.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 5.8e-159 565.8 329 82.7
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 9.7e-122 442.2 300 75.7
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.4e-114 416.0 254 79.5
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.7e-95 354.4 358 55.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.7e-94 351.7 194 88.1
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-91 341.7 380 48.7
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 4.0e-91 340.5 389 51.9
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.5e-77 294.7 246 62.6
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.9e-69 268.5 182 74.2
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 7.3e-69 266.5 275 54.9
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.0e-54 219.5 139 79.1
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.9e-49 201.4 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.5e-45 189.1 117 81.2
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.5e-37 161.8 94 83.0
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.9e-33 148.3 83 81.9
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.3e-30 139.4 82 85.4
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 2.3e-30 138.7 103 65.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.3e-28 132.9 124 54.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.2e-24 117.9 76 71.1
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 6.7e-22 110.5 84 64.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 8.7e-22 110.2 74 73.0
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 2.1e-20 105.5 67 77.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 8.4e-17 93.6 68 69.1
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 6.7e-14 84.0 105 51.4
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.5e-10 72.8 49 73.5
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.9e-10 70.9 42 85.7
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-07 63.2 41 78.0


User provided reference genes

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