Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.6e-121 439.5 227 100.0
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 4.4e-47 192.2 205 50.7
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 8.2e-46 188.0 163 63.2
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.4e-45 187.2 202 52.5
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 9.1e-45 184.5 197 51.8
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 3.5e-44 182.6 246 47.6
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.3e-43 180.6 202 53.0
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 5.0e-43 178.7 220 47.7
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.9e-42 176.8 211 49.3
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.5e-42 176.4 212 50.0
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.5e-42 175.3 211 48.8
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.5e-42 175.3 211 48.8
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 9.4e-42 174.5 187 50.8
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.2e-41 174.1 211 47.9
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 3.6e-41 172.6 213 46.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 6.1e-41 171.8 211 47.9
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 1.4e-40 170.6 216 47.7
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 3.0e-40 169.5 171 56.1
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 8.8e-40 167.9 202 46.5
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 1.1e-39 167.5 219 47.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.7e-39 165.2 207 47.3
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 5.7e-39 165.2 208 49.5
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 4.8e-38 162.2 202 48.0
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 1.8e-37 160.2 215 44.7
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.2e-36 157.5 203 45.3
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.0e-36 156.8 211 44.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.6e-36 156.4 212 47.2
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 1.7e-35 153.7 207 42.5
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 1.9e-34 150.2 207 43.5
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 9.4e-34 147.9 207 41.5
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 6.1e-33 145.2 205 45.4
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.0e-32 144.4 203 42.4
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.4e-32 144.1 195 42.6
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.8e-32 141.4 164 46.3
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.4e-31 139.0 122 54.1
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 5.7e-31 138.7 190 37.4
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 7.5e-31 138.3 208 40.4
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.1e-29 134.4 202 40.1
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 3.1e-29 132.9 160 46.2
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.6e-28 130.6 185 42.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 7.7e-28 128.3 186 43.0
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.0e-27 127.9 174 39.1
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 2.9e-27 126.3 134 47.8
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 8.5e-27 124.8 202 38.1
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.2e-25 120.9 244 32.8
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 1.2e-25 120.9 239 34.7
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 1.2e-25 120.9 92 64.1
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.1e-25 120.2 163 41.7
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.7e-25 119.8 208 37.0
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 3.6e-25 119.4 165 40.6
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.1e-25 118.6 109 50.5
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.0e-24 117.9 166 41.0
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 5.2e-24 115.5 220 34.5
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.5e-23 114.0 170 40.0
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 9.8e-23 111.3 147 44.9
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 4.9e-22 109.0 233 32.6
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 5.4e-21 105.5 199 35.2
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.6e-20 104.0 255 31.0
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.6e-20 104.0 254 31.9
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 3.5e-20 102.8 126 44.4
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 2.9e-19 99.8 175 37.1
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 2.9e-19 99.8 114 46.5
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 9.5e-18 94.7 138 43.5
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 6.1e-17 92.0 195 32.3
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 6.1e-17 92.0 79 50.6
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 1.8e-16 90.5 73 57.5
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 4.0e-16 89.4 195 28.7
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 4.0e-16 89.4 87 47.1
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 5.2e-16 89.0 71 59.2
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 6.8e-16 88.6 175 32.6
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 6.8e-16 88.6 175 32.6
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.0e-15 87.0 99 44.4
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 2.6e-15 86.7 249 26.1
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 3.4e-15 86.3 75 52.0
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.4e-15 86.3 71 52.1
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 5.7e-15 85.5 133 38.3
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.5e-15 85.1 136 35.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 9.8e-15 84.7 81 45.7
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 1.3e-14 84.3 168 33.3
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 1.3e-14 84.3 120 35.0
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.7e-14 84.0 132 40.2
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.2e-14 83.6 71 50.7
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 2.2e-14 83.6 136 34.6
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-14 83.2 136 34.6
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 4.9e-14 82.4 71 50.7
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 4.9e-14 82.4 165 31.5
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.1e-13 81.3 165 30.9
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.4e-13 80.9 119 38.7
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.4e-13 80.9 128 32.8
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 1.8e-13 80.5 158 32.3
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 1.8e-13 80.5 183 31.7
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 3.2e-13 79.7 130 33.8
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 3.2e-13 79.7 114 36.0
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.0e-13 78.6 146 32.2
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.0e-13 78.6 196 30.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.2e-12 77.8 101 38.6
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.2e-12 77.8 124 34.7
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 1.6e-12 77.4 77 48.1
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.0e-12 77.0 121 38.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 3.5e-12 76.3 77 41.6
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 5.9e-12 75.5 119 34.5
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 7.8e-12 75.1 121 38.0
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 7.8e-12 75.1 150 32.7
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.3e-11 74.3 117 36.8
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 1.7e-11 73.9 131 35.9
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 2.3e-11 73.6 166 31.3
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 8.6e-11 71.6 81 38.3
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.9e-10 70.5 103 35.0
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 3.3e-10 69.7 71 46.5
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 5.6e-10 68.9 75 38.7
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 7.3e-10 68.6 79 44.3
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 7.3e-10 68.6 79 44.3
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 2.1e-09 67.0 149 29.5
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-09 66.6 75 45.3
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-09 66.6 75 45.3
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-09 66.6 75 45.3
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 3.6e-09 66.2 87 39.1
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.6e-09 66.2 123 34.1
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 4.7e-09 65.9 74 39.2
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 1.4e-08 64.3 91 35.2
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 1.4e-08 64.3 103 35.9
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.8e-08 63.9 76 38.2
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.8e-08 63.9 130 30.8
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.3e-08 63.5 74 37.8
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 3.1e-08 63.2 93 36.6
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 3.1e-08 63.2 103 35.0
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 3.1e-08 63.2 191 27.2
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 4.0e-08 62.8 74 39.2
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 5.2e-08 62.4 76 36.8
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 6.8e-08 62.0 94 34.0
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 8.9e-08 61.6 74 35.1
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 8.9e-08 61.6 74 35.1
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 8.9e-08 61.6 68 39.7
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.2e-07 61.2 138 28.3
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.5e-07 60.8 76 34.2
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.0e-07 60.5 74 37.8
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 2.6e-07 60.1 74 37.8
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.6e-07 60.1 77 36.4
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 3.4e-07 59.7 73 37.0
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 3.4e-07 59.7 148 25.7
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.4e-07 59.7 74 37.8
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 4.4e-07 59.3 72 37.5
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 4.4e-07 59.3 151 27.8
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 5.8e-07 58.9 146 29.5
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 7.5e-07 58.5 120 29.2
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 1.3e-06 57.8 68 41.2
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.3e-06 57.8 112 33.9
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.7e-06 57.4 68 36.8
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 2.2e-06 57.0 113 29.2
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.2e-06 57.0 69 39.1
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 2.9e-06 56.6 69 37.7
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.9e-06 56.6 157 26.1
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 3.7e-06 56.2 83 32.5
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.7e-06 56.2 72 38.9
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 3.7e-06 56.2 106 31.1
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 4.9e-06 55.8 126 28.6
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 4.9e-06 55.8 70 40.0
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 4.9e-06 55.8 70 38.6
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 6.4e-06 55.5 68 38.2
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 6.4e-06 55.5 150 26.0
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 6.4e-06 55.5 69 36.2
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 6.4e-06 55.5 74 35.1
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 8.3e-06 55.1 88 30.7
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 8.3e-06 55.1 68 35.3
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 8.3e-06 55.1 139 29.5
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 8.3e-06 55.1 119 31.1


User provided reference genes

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