Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 7.2e-206 720.3 357 100.0
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.6e-88 330.5 267 59.9
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 9.8e-86 321.2 291 57.0
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.3e-81 305.8 261 60.9
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.5e-78 295.0 252 54.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.9e-77 292.4 246 55.7
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.9e-77 292.4 250 56.4
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.4e-76 290.0 265 52.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.1e-76 289.3 261 54.0
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 9.2e-76 288.1 248 54.8
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 3.5e-75 286.2 259 54.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 7.8e-75 285.0 261 52.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 7.8e-75 285.0 256 53.5
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 8.6e-74 281.6 252 56.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.5e-73 280.8 261 52.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.3e-73 279.3 253 55.3
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 4.3e-73 279.3 257 52.9
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.6e-72 277.3 262 53.1
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.8e-72 276.6 261 52.1
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 3.6e-72 276.2 253 54.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.0e-71 274.6 265 51.3
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.0e-71 274.6 265 51.3
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.0e-71 274.6 253 52.6
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.4e-71 274.2 271 51.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.3e-71 273.5 261 52.5
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.3e-71 273.5 265 50.6
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.3e-71 273.5 265 50.6
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.3e-71 273.5 261 51.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 3.1e-71 273.1 257 52.5
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.1e-71 273.1 265 50.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.2e-71 272.3 265 50.9
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 5.2e-71 272.3 250 54.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.8e-71 271.9 250 52.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.0e-70 270.4 256 52.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 3.4e-70 269.6 261 51.3
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.7e-69 267.3 261 52.5
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.4e-69 265.4 271 49.8
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 8.3e-69 265.0 250 51.2
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 8.3e-69 265.0 250 51.2
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 8.3e-69 265.0 250 51.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.9e-68 263.8 289 48.1
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 9.2e-68 261.5 263 51.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-67 260.8 252 51.6
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.7e-67 260.0 262 54.2
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 3.0e-66 256.5 238 52.5
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 6.6e-66 255.4 259 49.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 8.6e-66 255.0 250 48.8
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-65 254.6 246 50.8
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.5e-65 253.4 264 50.0
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 3.3e-65 253.1 248 48.8
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 4.3e-65 252.7 264 49.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 5.6e-65 252.3 247 50.6
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 7.3e-65 251.9 253 48.2
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.1e-64 250.4 275 45.5
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.8e-64 250.0 247 49.8
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 3.6e-64 249.6 247 49.8
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.1e-63 248.1 264 48.1
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.8e-63 247.3 250 50.4
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 3.1e-63 246.5 255 49.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.1e-63 246.5 264 48.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 4.0e-63 246.1 254 47.2
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 6.8e-63 245.4 221 53.4
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.5e-62 244.2 250 48.0
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.0e-62 243.8 286 45.8
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.0e-62 243.8 273 48.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 2.2e-61 240.4 265 47.5
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.2e-61 240.4 253 47.4
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.7e-61 239.6 219 52.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-60 238.0 265 47.5
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-60 238.0 265 47.5
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 7.1e-60 235.3 285 45.3
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.1e-60 235.3 264 47.0
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 7.1e-60 235.3 253 47.8
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.0e-58 231.5 224 51.3
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 5.1e-58 229.2 279 44.1
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 8.6e-58 228.4 244 47.5
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.1e-57 228.0 249 45.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.5e-57 227.6 250 48.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.5e-57 227.6 267 45.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.5e-57 226.9 269 45.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 5.6e-57 225.7 249 48.2
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.2e-56 224.6 250 46.8
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.2e-56 224.6 216 48.1
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.8e-56 223.4 162 68.5
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 6.2e-56 222.2 247 47.0
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.8e-54 215.7 155 67.7
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-53 211.8 250 44.8
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-52 211.5 242 45.9
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-52 209.1 258 43.8
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-51 207.6 258 43.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-51 207.6 258 43.4
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-51 207.6 258 43.4
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-51 206.8 258 43.0
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-51 206.8 258 43.0
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-51 206.5 243 44.0
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 4.6e-51 206.1 231 43.7
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-51 205.7 258 43.0
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-51 205.7 258 43.4
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 6.6e-50 202.2 177 51.4
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-49 201.1 258 42.6
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.3e-49 199.9 276 42.8
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.2e-48 198.0 264 42.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.8e-47 194.1 248 46.0
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.4e-47 193.7 268 43.7
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-47 192.6 241 43.2
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.5e-46 191.0 266 45.1
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.6e-46 190.3 258 44.6
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 9.9e-46 188.3 254 42.9
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.3e-45 188.0 268 45.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.7e-45 187.6 272 43.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 3.8e-45 186.4 267 44.2
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.1e-44 184.9 255 43.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 3.2e-44 183.3 256 42.2
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 3.2e-44 183.3 256 42.2
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 5.4e-44 182.6 257 42.0
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 5.4e-44 182.6 257 42.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.2e-43 181.4 257 41.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.5e-43 179.9 258 41.5
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.5e-43 179.9 193 49.2
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 3.3e-41 173.3 259 39.4
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 6.2e-40 169.1 250 38.4
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.1e-39 168.3 245 41.2
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.8e-39 167.5 207 44.0
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.2e-38 164.9 218 42.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.0e-38 164.1 245 40.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.1e-36 158.3 310 32.9
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.4e-36 157.9 252 38.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.4e-36 157.1 205 40.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-36 156.4 205 42.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-35 154.8 187 42.8
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-35 154.1 162 46.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-35 154.1 162 46.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 6.7e-34 149.1 142 50.0
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.5e-33 147.9 129 59.7
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-27 125.9 177 41.2
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 8.7e-26 122.1 174 38.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-25 120.2 151 43.0
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 3.7e-24 116.7 221 31.7
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.4e-20 104.8 102 51.0
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.1e-17 95.1 206 30.1
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 3.3e-17 93.6 198 30.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.2e-14 85.1 90 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 1.3e-10 71.6 150 28.0
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.3e-08 65.1 61 47.5
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-08 63.9 89 41.6
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.1e-07 58.9 95 38.9


User provided reference genes

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