Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 9.5e-130 466.8 235 100.0
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.4e-88 329.3 235 73.2
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.1e-84 316.2 233 69.1
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.0e-83 312.4 231 68.8
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 8.7e-83 310.8 226 70.4
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 7.4e-82 307.8 232 69.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.1e-81 306.2 232 68.5
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.8e-81 305.1 227 67.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 6.2e-81 304.7 227 67.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.1e-81 304.3 232 68.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.3e-80 301.6 229 68.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.2e-79 300.4 228 65.4
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 4.5e-79 298.5 227 67.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.0e-78 297.4 229 69.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.1e-77 293.9 231 64.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.1e-77 293.9 231 64.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.2e-77 292.0 231 64.9
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.7e-76 289.3 227 66.1
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.5e-76 288.9 227 64.3
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.5e-76 288.9 227 64.3
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.6e-76 288.5 233 64.8
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.6e-76 288.5 231 63.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.6e-76 288.5 226 64.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 6.0e-76 288.1 231 63.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 7.9e-76 287.7 228 64.0
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 7.9e-76 287.7 228 66.2
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.7e-75 284.6 228 64.9
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 8.7e-75 284.3 227 66.1
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.5e-74 282.7 227 63.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.3e-74 282.3 228 61.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.3e-74 282.3 197 71.1
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 5.7e-74 281.6 227 63.9
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 7.4e-74 281.2 229 63.3
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.6e-74 280.8 227 64.8
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.3e-73 280.4 226 64.2
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.3e-73 280.4 228 63.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.3e-73 280.4 225 65.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.8e-73 279.3 230 63.5
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 4.8e-73 278.5 227 64.3
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.4e-72 276.9 226 61.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.1e-72 275.4 227 63.9
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.2e-71 273.9 226 62.8
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.5e-71 273.5 227 64.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 2.0e-71 273.1 228 62.7
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.4e-71 272.3 230 60.0
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.4e-71 272.3 199 66.3
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.5e-71 271.9 199 68.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 7.6e-71 271.2 228 65.8
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.0e-70 270.8 228 62.7
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.3e-70 270.4 226 61.9
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.2e-70 269.6 233 61.4
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.9e-70 269.2 218 64.7
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 2.9e-70 269.2 232 65.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 5.0e-70 268.5 232 66.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.4e-70 267.7 228 60.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.5e-69 266.2 204 68.1
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 3.2e-69 265.8 234 61.5
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 4.2e-69 265.4 235 63.8
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 4.2e-69 265.4 227 63.0
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 4.2e-69 265.4 227 63.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 5.5e-69 265.0 234 65.0
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.5e-69 265.0 229 60.7
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.2e-68 263.8 236 61.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.6e-68 263.5 232 63.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.9e-68 261.2 234 59.0
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.0e-67 260.8 229 63.8
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.0e-67 260.8 229 60.3
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.3e-67 260.4 226 60.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.3e-67 260.4 234 61.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.8e-67 260.0 218 63.3
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 3.9e-67 258.8 233 60.1
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.9e-67 258.8 197 64.5
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 3.9e-67 258.8 201 64.7
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 5.1e-67 258.5 184 71.2
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 5.1e-67 258.5 230 60.0
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.7e-67 258.1 256 55.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 8.7e-67 257.7 227 58.6
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.9e-66 256.5 232 59.5
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 9.7e-66 254.2 227 58.6
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.3e-65 253.8 224 62.9
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.3e-65 253.8 181 69.6
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.2e-65 253.1 224 61.6
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 2.8e-65 252.7 227 60.4
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.4e-64 250.4 230 60.0
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.8e-64 250.0 219 63.0
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.1e-64 249.2 203 64.0
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.1e-64 249.2 230 58.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 6.9e-64 248.1 183 67.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.2e-63 247.3 227 60.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.2e-62 243.0 260 51.9
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 5.0e-62 241.9 232 56.9
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 5.0e-62 241.9 229 59.8
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 6.5e-62 241.5 232 61.2
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 6.5e-62 241.5 230 59.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.4e-61 240.4 228 60.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.9e-61 240.0 199 63.8
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-61 239.6 232 57.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.5e-61 239.6 181 64.1
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.2e-61 239.2 158 73.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 5.5e-61 238.4 230 57.8
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 9.4e-61 237.7 229 59.8
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 9.4e-61 237.7 230 56.5
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.2e-60 237.3 230 55.7
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-60 236.9 229 59.8
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.6e-60 236.9 230 60.4
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.7e-60 236.1 234 57.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.7e-60 236.1 234 57.7
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.6e-60 235.3 234 57.7
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 7.9e-60 234.6 200 64.0
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.0e-59 234.2 199 61.3
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.0e-59 232.6 198 58.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 8.8e-59 231.1 230 54.8
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-58 230.7 227 57.7
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-58 228.4 156 73.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-57 227.3 232 56.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.5e-55 220.3 155 72.3
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.5e-55 218.8 159 71.1
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.0e-54 217.6 227 52.4
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.0e-54 217.6 227 52.4
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 3.8e-54 215.7 230 54.3
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.1e-53 214.2 218 55.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-53 213.0 153 71.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.2e-52 210.7 216 53.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.7e-52 209.5 230 52.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.0e-51 207.6 230 50.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.0e-51 207.6 154 67.5
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.8e-51 206.8 248 50.0
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 5.1e-51 205.3 152 67.1
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 4.4e-50 202.2 183 60.7
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 9.7e-50 201.1 230 49.1
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 3.7e-49 199.1 138 72.5
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.8e-49 198.7 230 50.4
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 5.3e-48 195.3 202 54.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.9e-47 191.8 205 55.1
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.7e-44 182.2 231 47.6
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.4e-42 175.6 127 68.5
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.4e-40 170.6 162 57.4
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.1e-40 169.1 163 56.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 5.9e-39 165.2 109 74.3
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.5e-37 160.6 99 80.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.4e-37 157.9 150 59.3
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.4e-34 149.1 209 47.8
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.7e-33 146.0 164 52.4
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 5.9e-31 138.7 137 55.5
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.3e-30 137.5 169 47.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.9e-30 136.3 133 54.9
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 8.5e-30 134.8 99 65.7
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.6e-28 129.4 131 55.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 9.2e-24 114.8 77 72.7
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-21 106.7 71 76.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-17 94.4 95 57.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-17 94.4 95 57.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.4e-16 90.9 64 73.4
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.2e-15 87.8 161 35.4
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.5e-15 86.3 63 65.1
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 5.6e-13 79.0 133 33.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 2.3e-11 73.6 105 39.0
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 3.9e-06 56.2 71 42.3


User provided reference genes

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