Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.8e-78 295.8 148 100.0
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 5.5e-59 231.1 148 76.4
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 5.5e-59 231.1 148 75.0
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 2.3e-57 225.7 148 74.3
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 2.3e-57 225.7 148 74.3
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 4.0e-57 224.9 148 74.3
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 5.2e-57 224.6 145 74.5
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 6.7e-57 224.2 148 73.6
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.6e-56 222.2 148 73.0
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 3.3e-56 221.9 148 72.3
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 4.4e-56 221.5 148 71.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 4.4e-56 221.5 147 73.5
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 5.7e-56 221.1 148 75.7
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 9.7e-56 220.3 148 69.6
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 9.7e-56 220.3 144 76.4
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 9.7e-56 220.3 148 73.0
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 72.3
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.8e-55 218.0 148 69.6
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 6.3e-55 217.6 148 71.6
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 6.3e-55 217.6 148 71.6
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 6.3e-55 217.6 171 67.8
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 71.6
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.1e-54 216.9 148 69.6
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.1e-54 216.9 145 69.7
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 71.6
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 73.6
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 2.4e-54 215.7 168 66.1
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 71.6
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 71.6
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 3.1e-54 215.3 148 70.9
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 3.1e-54 215.3 148 74.3
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 4.1e-54 214.9 148 71.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 7.0e-54 214.2 148 68.2
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 9.1e-54 213.8 148 70.3
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 9.1e-54 213.8 149 67.8
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.0e-53 212.6 148 67.6
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 2.0e-53 212.6 148 70.3
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.5e-53 211.8 148 70.9
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 5.9e-53 211.1 146 69.9
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 7.7e-53 210.7 148 69.6
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.0e-52 210.3 148 68.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 2.9e-52 208.8 148 68.2
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.9e-52 208.8 149 69.1
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 5.0e-52 208.0 148 68.2
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 5.0e-52 208.0 172 65.1
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 6.5e-52 207.6 148 67.6
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 6.5e-52 207.6 172 65.1
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 6.5e-52 207.6 146 66.4
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 6.5e-52 207.6 154 68.8
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 8.5e-52 207.2 136 75.0
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 1.1e-51 206.8 148 68.2
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 1.5e-51 206.5 148 71.6
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 69.6
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 70.3
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 67.6
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.5e-51 205.7 151 66.9
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 3.2e-51 205.3 148 68.2
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 4.2e-51 204.9 148 68.9
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.6e-50 203.0 146 66.4
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.1e-50 202.6 148 68.9
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 2.1e-50 202.6 213 53.5
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 3.6e-50 201.8 146 65.8
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 4.7e-50 201.4 148 67.6
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 4.7e-50 201.4 148 67.6
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 6.1e-50 201.1 148 66.9
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 1.4e-49 199.9 146 67.1
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.4e-49 199.9 149 69.1
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 6.8e-49 197.6 149 66.4
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 6.8e-49 197.6 149 66.4
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 6.8e-49 197.6 149 65.8
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 8.8e-49 197.2 186 57.5
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 8.8e-49 197.2 148 68.2
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 8.8e-49 197.2 148 68.2
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 8.8e-49 197.2 146 66.4
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 2.0e-48 196.1 148 64.2
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 3.4e-48 195.3 146 67.8
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 4.4e-48 194.9 149 65.8
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 1.3e-47 193.4 149 65.1
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 2.2e-47 192.6 149 65.8
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 3.7e-47 191.8 153 64.7
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 3.7e-47 191.8 165 60.6
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 4.8e-47 191.4 135 68.9
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.1e-46 190.3 148 62.2
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 3.1e-46 188.7 146 63.7
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 4.1e-46 188.3 148 61.5
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 3.5e-45 185.3 131 67.9
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 3.8e-44 181.8 143 62.2
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 2.5e-43 179.1 111 82.9
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 4.2e-43 178.3 120 73.3
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.0e-41 173.7 147 60.5
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 1.8e-41 172.9 174 54.0
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 3.0e-41 172.2 124 69.4
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 3.4e-40 168.7 138 57.2
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 3.1e-38 162.2 104 75.0
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 4.5e-37 158.3 145 50.3
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 4.9e-31 138.3 119 54.6
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.1e-30 137.1 148 50.7
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 2.7e-29 132.5 94 69.1
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 3.0e-28 129.0 104 63.5
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 1.7e-23 113.2 101 51.5
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.1e-22 110.5 82 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 1.0e-20 104.0 135 34.1
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 7.3e-19 97.8 66 71.2
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 7.3e-19 97.8 124 49.2
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 6.8e-17 91.3 64 68.8
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 8.9e-17 90.9 65 67.7
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.2e-16 90.5 102 52.9
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 7.5e-16 87.8 151 33.1
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 2.4e-14 82.8 142 31.7
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.1e-14 82.0 76 48.7
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.5e-11 72.8 45 73.3
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 2.1e-10 69.7 66 57.6
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 3.1e-09 65.9 65 46.2
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 4.4e-08 62.0 44 72.7
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.7e-07 60.1 38 73.7


User provided reference genes

Program Settings