Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030913 Daucus carota HOM05D000555 ORTHO05D001906 2.6e-62 241.9 121 100.0
DCAR_030833 Daucus carota HOM05D000555 ORTHO05D001906 5.9e-27 124.4 71 87.3
Lj2C256T17 Lonicera japonica HOM05D000555 ORTHO05D001906 1.1e-20 103.6 71 71.8
Manes.08G068700 Manihot esculenta HOM05D000555 ORTHO05D001906 1.1e-20 103.6 71 70.4
DCAR_002243 Daucus carota HOM05D000555 ORTHO05D001906 7.0e-20 100.9 71 66.2
Actinidia01447 Actinidia chinensis HOM05D000555 ORTHO05D001906 2.0e-19 99.4 71 66.2
Actinidia02284 Actinidia chinensis HOM05D000555 ORTHO05D001906 2.7e-19 99.0 71 66.2
QL05p067756 Quercus lobata HOM05D000555 ORTHO05D001906 3.5e-19 98.6 71 67.6
Ciclev10014035m.g Citrus clementina HOM05D000555 ORTHO05D001906 4.6e-19 98.2 71 66.2
CSS0012615 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 6.0e-19 97.8 71 66.2
CiPaw.09G108900 Carya illinoinensis HOM05D000555 ORTHO05D001906 1.0e-18 97.1 71 66.2
CSS0020180 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 1.3e-18 96.7 71 66.2
Cpa.g.sc27.226 Carica papaya HOM05D000555 ORTHO05D001906 1.3e-18 96.7 71 66.2
Manes.09G083700 Manihot esculenta HOM05D000555 ORTHO05D001906 1.3e-18 96.7 71 64.8
Peaxi162Scf00827g00520 Petunia axillaris HOM05D000555 ORTHO05D001906 1.3e-18 96.7 71 66.2
Haze_07020 Corylus avellana HOM05D000555 ORTHO05D001906 1.7e-18 96.3 71 66.2
Potri.006G004750 Populus trichocarpa HOM05D000555 ORTHO05D001906 1.7e-18 96.3 71 64.8
Sabra06G0004000 Salix brachista HOM05D000555 ORTHO05D001906 1.7e-18 96.3 71 66.2
CSS0028716 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 2.3e-18 95.9 71 64.8
CANSAT56G1713 Cannabis sativa HOM05D000555 ORTHO05D001906 2.3e-18 95.9 71 64.8
Dinv04395 Davidia involucrata HOM05D000555 ORTHO05D001906 5.0e-18 94.7 73 63.0
Phvul.003G087100 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 5.0e-18 94.7 71 63.4
VMungo1215G2808 Vigna mungo HOM05D000555 ORTHO05D001906 5.0e-18 94.7 71 63.4
Atru.chr1.2254 Acer truncatum HOM05D000555 ORTHO05D001906 8.6e-18 94.0 71 64.8
TWI63G0122 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 1.1e-17 93.6 71 64.8
Dinv15337 Davidia involucrata HOM05D000555 ORTHO05D001906 1.5e-17 93.2 71 63.4
Potri.016G005400 Populus trichocarpa HOM05D000555 ORTHO05D001906 1.5e-17 93.2 71 63.4
TAR624G0718 Trochodendron aralioides HOM05D000555 ORTHO05D001906 1.9e-17 92.8 71 60.6
CiPaw.10G082000 Carya illinoinensis HOM05D000555 ORTHO05D001906 2.5e-17 92.4 71 64.8
Lj4g0005227 Lotus japonicus HOM05D000555 ORTHO05D001906 4.3e-17 91.7 71 63.4
Nitab4.5_0001296g0110 Nicotiana tabacum HOM05D000555 ORTHO05D001906 4.3e-17 91.7 71 63.4
Prupe.4G003600 Prunus persica HOM05D000555 ORTHO05D001906 4.3e-17 91.7 71 60.6
Hma1.2p1_1175F.1_g264040 Hydrangea macrophylla HOM05D000555 ORTHO05D001906 5.6e-17 91.3 71 62.0
Rhsim13G0140500 Rhododendron simsii HOM05D000555 ORTHO05D001906 5.6e-17 91.3 71 62.0
Solyc11g012770.2 Solanum lycopersicum HOM05D000555 ORTHO05D001906 5.6e-17 91.3 71 63.4
Sopen11g007510 Solanum pennellii HOM05D000555 ORTHO05D001906 5.6e-17 91.3 71 63.4
Duzib192G0010 Durio zibethinus HOM05D000555 ORTHO05D001906 9.5e-17 90.5 71 63.4
Psat0s3798g0160 Pisum sativum HOM05D000555 ORTHO05D001906 9.5e-17 90.5 71 62.0
TAR622G0214 Trochodendron aralioides HOM05D000555 ORTHO05D001906 9.5e-17 90.5 71 59.2
TAR622G1051 Trochodendron aralioides HOM05D000555 ORTHO05D001906 9.5e-17 90.5 71 59.2
CARHR173620 Cardamine hirsuta HOM05D000555 ORTHO05D001906 1.2e-16 90.1 69 60.9
ClCG01G011160 Citrullus lanatus HOM05D000555 ORTHO05D001906 1.2e-16 90.1 71 62.0
Glyma.17G005500 Glycine max HOM05D000555 ORTHO05D001906 1.2e-16 90.1 71 60.6
RcHm_v2.0_Chr5g0000481 Rosa chinensis HOM05D000555 ORTHO05D001906 1.2e-16 90.1 71 59.2
Sed0016925 Sechium edule HOM05D000555 ORTHO05D001906 1.6e-16 89.7 71 62.0
PGR042G1037 Punica granatum HOM05D000555 ORTHO05D001906 2.1e-16 89.4 71 60.6
Duzib235G0542 Durio zibethinus HOM05D000555 ORTHO05D001906 2.8e-16 89.0 71 60.6
Glyma.07G268200 Glycine max HOM05D000555 ORTHO05D001906 2.8e-16 89.0 71 59.2
FvH4_3g00310 Fragaria vesca HOM05D000555 ORTHO05D001906 3.6e-16 88.6 71 57.7
FAN21G3189 Fragaria x ananassa HOM05D000555 ORTHO05D001906 3.6e-16 88.6 71 57.7
TWI38G2314 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 3.6e-16 88.6 69 62.3
Nn1g07523 Nelumbo nucifera HOM05D000555 ORTHO05D001906 4.7e-16 88.2 71 62.0
TPR.G5976 Trifolium pratense HOM05D000555 ORTHO05D001906 4.7e-16 88.2 71 60.6
FAN25G3005 Fragaria x ananassa HOM05D000555 ORTHO05D001906 6.2e-16 87.8 71 57.7
GSVIVG01002823001 Vitis vinifera HOM05D000555 ORTHO05D001906 6.2e-16 87.8 71 59.2
MD05G1361800 Malus domestica HOM05D000555 ORTHO05D001906 8.1e-16 87.4 71 57.7
MSTRG.13105 Avicennia marina HOM05D000555 ORTHO05D001906 1.1e-15 87.0 71 59.2
Eucgr.E03853 Eucalyptus grandis HOM05D000555 ORTHO05D001906 1.1e-15 87.0 71 62.0
Thhalv10000739m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 1.1e-15 87.0 69 59.4
MD10G1339300 Malus domestica HOM05D000555 ORTHO05D001906 1.4e-15 86.7 71 56.3
Carub.0008s0009 Capsella rubella HOM05D000555 ORTHO05D001906 1.8e-15 86.3 69 60.9
Cc09_g00310 Coffea canephora HOM05D000555 ORTHO05D001906 1.8e-15 86.3 71 57.7
MELO3C025570.2 Cucumis melo HOM05D000555 ORTHO05D001906 2.3e-15 85.9 71 59.2
CsaV3_1G015470 Cucumis sativus L. HOM05D000555 ORTHO05D001906 2.3e-15 85.9 71 59.2
THA.LOC104806739 Tarenaya hassleriana HOM05D000555 ORTHO05D001906 2.3e-15 85.9 71 57.7
vmacro03607 Vaccinium macrocarpon HOM05D000555 ORTHO05D001906 2.3e-15 85.9 71 59.2
AL8G10260 Arabidopsis lyrata HOM05D000555 ORTHO05D001906 3.1e-15 85.5 69 59.4
CAN.G1156.22 Capsicum annuum HOM05D000555 ORTHO05D001906 3.1e-15 85.5 71 60.6
Nn1g03168 Nelumbo nucifera HOM05D000555 ORTHO05D001906 3.1e-15 85.5 69 58.0
Thecc.06G241200 Theobroma cacao HOM05D000555 ORTHO05D001906 3.1e-15 85.5 71 60.6
AT5G47690 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 4.0e-15 85.1 69 59.4
Gohir.D09G067600 Gossypium hirsutum HOM05D000555 ORTHO05D001906 4.0e-15 85.1 71 59.2
Gorai.006G082000 Gossypium raimondii HOM05D000555 ORTHO05D001906 4.0e-15 85.1 71 59.2
Lj6g0000834 Lotus japonicus HOM05D000555 ORTHO05D001906 4.0e-15 85.1 71 54.9
Ca_20991_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 5.2e-15 84.7 71 59.2
Gohir.A09G067800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 6.8e-15 84.3 71 57.7
arahy.Tifrunner.gnm1.ann1.AVE6NE Arachis hypogaea HOM05D000555 ORTHO05D001906 8.9e-15 84.0 71 59.2
arahy.Tifrunner.gnm1.ann1.M87LIL Arachis hypogaea HOM05D000555 ORTHO05D001906 8.9e-15 84.0 71 59.2
Glyma.15G120300 Glycine max HOM05D000555 ORTHO05D001906 1.2e-14 83.6 71 57.7
Gohir.A06G203800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 1.2e-14 83.6 71 57.7
Gohir.D06G217750 Gossypium hirsutum HOM05D000555 ORTHO05D001906 1.2e-14 83.6 71 57.7
Gorai.010G248500 Gossypium raimondii HOM05D000555 ORTHO05D001906 1.2e-14 83.6 71 57.7
Lalb_Chr15g0088251 Lupinus albus HOM05D000555 ORTHO05D001906 1.2e-14 83.6 71 54.9
THA.LOC104812796 Tarenaya hassleriana HOM05D000555 ORTHO05D001906 1.2e-14 83.6 73 57.5
Sp2g12400 Schrenkiella parvula HOM05D000555 ORTHO05D001906 1.5e-14 83.2 69 58.0
Aa31sc219G80 Aethionema arabicum HOM05D000555 ORTHO05D001906 2.0e-14 82.8 69 56.5
MBI15_g03489_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 2.0e-14 82.8 71 56.3
Medtr4g134080 Medicago truncatula HOM05D000555 ORTHO05D001906 2.0e-14 82.8 71 56.3
Sc17g0008000 Simmondsia chinensis HOM05D000555 ORTHO05D001906 2.0e-14 82.8 71 54.9
arahy.Tifrunner.gnm1.ann1.BX9WGX Arachis hypogaea HOM05D000555 ORTHO05D001906 2.6e-14 82.4 71 57.7
arahy.Tifrunner.gnm1.ann1.JIL7XJ Arachis hypogaea HOM05D000555 ORTHO05D001906 2.6e-14 82.4 71 57.7
SGA_v2.0_scaffold49G18219 Striga asiatica HOM05D000555 ORTHO05D001906 3.4e-14 82.0 71 54.9
VMungo0540G1053 Vigna mungo HOM05D000555 ORTHO05D001906 3.4e-14 82.0 71 54.9
BraA02t08154Z Brassica rapa HOM05D000555 ORTHO05D001906 5.8e-14 81.3 69 55.1
Hund21131 Selenicereus undatus HOM05D000555 ORTHO05D001906 5.8e-14 81.3 71 56.3
Ah.09g233870 Amaranthus hybridus HOM05D000555 ORTHO05D001906 7.5e-14 80.9 71 52.1
HanXRQChr01g0003561 Helianthus annuus HOM05D000555 ORTHO05D001906 7.5e-14 80.9 71 54.9
MBI14_g10147_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 7.5e-14 80.9 91 49.5
PSO210G1034 Papaver somniferum HOM05D000555 ORTHO05D001906 7.5e-14 80.9 71 53.5
Oeu057018.1 Olea europaea HOM05D000555 ORTHO05D001906 9.8e-14 80.5 71 54.9
Phvul.006G138400 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 1.3e-13 80.1 71 53.5
SGA_v2.0_scaffold239G43974 Striga asiatica HOM05D000555 ORTHO05D001906 1.7e-13 79.7 71 57.7
BcaC03g16985 Brassica carinata HOM05D000555 ORTHO05D001906 2.2e-13 79.3 69 52.2
BolC2t10981H Brassica oleracea HOM05D000555 ORTHO05D001906 2.2e-13 79.3 69 52.2
Medtr2g027090 Medicago truncatula HOM05D000555 ORTHO05D001906 2.9e-13 79.0 71 52.1
Glyma.09G014600 Glycine max HOM05D000555 ORTHO05D001906 3.7e-13 78.6 71 56.3
BcaC06g34231 Brassica carinata HOM05D000555 ORTHO05D001906 6.4e-13 77.8 69 56.5
A06p44850 Brassica napus HOM05D000555 ORTHO05D001906 6.4e-13 77.8 69 56.5
BolC7t43676H Brassica oleracea HOM05D000555 ORTHO05D001906 6.4e-13 77.8 69 56.5
BraA06t27357Z Brassica rapa HOM05D000555 ORTHO05D001906 6.4e-13 77.8 69 56.5
Lalb_Chr20g0119541 Lupinus albus HOM05D000555 ORTHO05D001906 6.4e-13 77.8 68 55.9
Oeu025966.1 Olea europaea HOM05D000555 ORTHO05D001906 6.4e-13 77.8 71 52.1
Aqoxy1G02801 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 8.3e-13 77.4 71 56.3
A02p31510 Brassica napus HOM05D000555 ORTHO05D001906 8.3e-13 77.4 69 52.2
AUR62012854 Chenopodium quinoa HOM05D000555 ORTHO05D001906 8.3e-13 77.4 71 50.7
AUR62021811 Chenopodium quinoa HOM05D000555 ORTHO05D001906 8.3e-13 77.4 71 49.3
ATR0751G127 Amborella trichopoda HOM05D000555 ORTHO05D001906 1.1e-12 77.0 71 54.9
EL10Ac8g20267 Beta vulgaris HOM05D000555 ORTHO05D001906 1.1e-12 77.0 71 52.1
TPR.G17534 Trifolium pratense HOM05D000555 ORTHO05D001906 1.4e-12 76.6 71 50.7
Ca_00764_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 1.9e-12 76.3 71 50.7
Zm00001eb280900 Zea mays HOM05D000555 ORTHO05D001906 1.9e-12 76.3 71 53.5
BcaC06g31349 Brassica carinata HOM05D000555 ORTHO05D001906 2.4e-12 75.9 69 55.1
C02p48870 Brassica napus HOM05D000555 ORTHO05D001906 2.4e-12 75.9 70 51.4
Lalb_Chr18g0057341 Lupinus albus HOM05D000555 ORTHO05D001906 5.4e-12 74.7 71 54.9
SGA_v2.0_scaffold7G03693 Striga asiatica HOM05D000555 ORTHO05D001906 7.1e-12 74.3 71 50.7
Migut.H01632 Erythranthe guttata HOM05D000555 ORTHO05D001906 9.2e-12 73.9 71 52.1
C07p31350 Brassica napus HOM05D000555 ORTHO05D001906 1.2e-11 73.6 67 55.2
Psat1g172440 Pisum sativum HOM05D000555 ORTHO05D001906 2.1e-11 72.8 69 49.3
Os06g0286351 Oryza sativa ssp. japonica HOM05D000555 ORTHO05D001906 2.7e-11 72.4 74 51.4
Zm00001eb380840 Zea mays HOM05D000555 ORTHO05D001906 3.5e-11 72.0 71 53.5
unitig_21.g20239 Utricularia gibba HOM05D000555 ORTHO05D001906 4.6e-11 71.6 71 49.3
Migut.M01445 Erythranthe guttata HOM05D000555 ORTHO05D001906 6.0e-11 71.2 72 50.0
Lalb_Chr07g0176931 Lupinus albus HOM05D000555 ORTHO05D001906 1.0e-10 70.5 71 50.7
CDE05G2238 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 1.3e-10 70.1 69 49.3
SalBow1G3972 Salvia bowleyana HOM05D000555 ORTHO05D001906 1.3e-10 70.1 99 41.4
MSTRG.16054 Avicennia marina HOM05D000555 ORTHO05D001906 1.7e-10 69.7 71 49.3
Lsat_1_v5_gn_1_130161 Lactuca sativa HOM05D000555 ORTHO05D001906 2.3e-10 69.3 71 49.3
ECA248G1369 Erigeron canadensis HOM05D000555 ORTHO05D001906 3.0e-10 68.9 74 47.3
Oeu044433.1 Olea europaea HOM05D000555 ORTHO05D001906 6.6e-10 67.8 71 50.7
Mapoly0004s0286 Marchantia polymorpha HOM05D000555 ORTHO05D001906 1.5e-09 66.6 69 44.9
Lsat_1_v5_gn_4_63920 Lactuca sativa HOM05D000555 ORTHO05D001906 3.3e-09 65.5 69 44.9
Pp3c23_10270 Physcomitrium patens HOM05D000555 ORTHO05D001906 5.6e-09 64.7 71 43.7
SEGI_14130 Sequoiadendron giganteum HOM05D000555 ORTHO05D001906 7.3e-09 64.3 71 46.5
COL.COLO4_31942 Corchorus olitorius HOM05D000555 ORTHO05D001906 3.6e-08 62.0 53 52.8
ECA234G0651 Erigeron canadensis HOM05D000555 ORTHO05D001906 1.1e-07 60.5 71 39.4
MBI09_g12164_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 2.6e-06 55.8 72 40.3
Pp3c10_24900 Physcomitrium patens HOM05D000555 ORTHO05D001906 4.4e-06 55.1 71 35.2
ATR0584G256 Amborella trichopoda HOM05D000555 ORTHO05D001906 5.8e-06 54.7 83 38.6


User provided reference genes

Program Settings