Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030889 Daucus carota HOM05D002056 ORTHO05D002289 1.2e-22 109.0 55 100.0
Oeu002749.1 Olea europaea HOM05D002056 ORTHO05D002289 9.6e-17 89.4 50 88.0
Gohir.A05G173200 Gossypium hirsutum HOM05D002056 ORTHO05D002289 2.8e-16 87.8 50 86.0
Actinidia02337 Actinidia chinensis HOM05D002056 ORTHO05D002289 6.2e-16 86.7 50 84.0
Dinv13939 Davidia involucrata HOM05D002056 ORTHO05D002289 8.2e-16 86.3 50 86.0
COL.COLO4_31832 Corchorus olitorius HOM05D002056 ORTHO05D002289 1.4e-15 85.5 50 84.0
Duzib192G0881 Durio zibethinus HOM05D002056 ORTHO05D002289 1.4e-15 85.5 50 84.0
Ciclev10016067m.g Citrus clementina HOM05D002056 ORTHO05D002289 1.8e-15 85.1 50 84.0
Duzib235G0115 Durio zibethinus HOM05D002056 ORTHO05D002289 1.8e-15 85.1 50 84.0
Manes.16G002900 Manihot esculenta HOM05D002056 ORTHO05D002289 1.8e-15 85.1 50 84.0
TAR627G0322 Trochodendron aralioides HOM05D002056 ORTHO05D002289 1.8e-15 85.1 50 86.0
TAR627G0856 Trochodendron aralioides HOM05D002056 ORTHO05D002289 1.8e-15 85.1 50 86.0
CARHR228980 Cardamine hirsuta HOM05D002056 ORTHO05D002289 2.4e-15 84.7 50 84.0
Migut.M01370 Erythranthe guttata HOM05D002056 ORTHO05D002289 2.4e-15 84.7 50 84.0
Gohir.D05G176200 Gossypium hirsutum HOM05D002056 ORTHO05D002289 2.4e-15 84.7 50 84.0
BcaC01g04565 Brassica carinata HOM05D002056 ORTHO05D002289 3.1e-15 84.3 51 80.4
A03p29920 Brassica napus HOM05D002056 ORTHO05D002289 3.1e-15 84.3 50 82.0
C03p36210 Brassica napus HOM05D002056 ORTHO05D002289 3.1e-15 84.3 51 80.4
BolC3t15930H Brassica oleracea HOM05D002056 ORTHO05D002289 3.1e-15 84.3 51 80.4
BraA03t12181Z Brassica rapa HOM05D002056 ORTHO05D002289 3.1e-15 84.3 50 82.0
Gorai.009G181600 Gossypium raimondii HOM05D002056 ORTHO05D002289 3.1e-15 84.3 50 84.0
Actinidia26884 Actinidia chinensis HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 82.0
BcaB01g02602 Brassica carinata HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 82.0
CARHR253300 Cardamine hirsuta HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 82.0
Hma1.2p1_0298F.1_g117460 Hydrangea macrophylla HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 84.0
Sp6g04570 Schrenkiella parvula HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 82.0
vmacro03664 Vaccinium macrocarpon HOM05D002056 ORTHO05D002289 4.0e-15 84.0 50 82.0
HanXRQChr15g0470811 Helianthus annuus HOM05D002056 ORTHO05D002289 5.3e-15 83.6 50 82.0
Lsat_1_v5_gn_7_14940 Lactuca sativa HOM05D002056 ORTHO05D002289 5.3e-15 83.6 50 80.0
PGR042G2006 Punica granatum HOM05D002056 ORTHO05D002289 5.3e-15 83.6 50 82.0
Eucgr.E03986 Eucalyptus grandis HOM05D002056 ORTHO05D002289 9.0e-15 82.8 50 82.0
TAR629G0679 Trochodendron aralioides HOM05D002056 ORTHO05D002289 9.0e-15 82.8 50 82.0
AT4G04210 Arabidopsis thaliana HOM05D002056 ORTHO05D002289 1.2e-14 82.4 50 86.0
BcaC04g21281 Brassica carinata HOM05D002056 ORTHO05D002289 1.2e-14 82.4 50 82.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.2e-14 82.4 50 82.0
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.2e-14 82.4 50 82.0
Carub.0007s1917 Capsella rubella HOM05D002056 ORTHO05D002289 1.2e-14 82.4 50 80.0
Atru.chr10.2284 Acer truncatum HOM05D002056 ORTHO05D002289 1.5e-14 82.0 50 82.0
MSTRG.7180 Avicennia marina HOM05D002056 ORTHO05D002289 1.5e-14 82.0 52 78.8
A09p26420 Brassica napus HOM05D002056 ORTHO05D002289 1.5e-14 82.0 50 82.0
SpUn0110_0010 Schrenkiella parvula HOM05D002056 ORTHO05D002289 1.5e-14 82.0 47 87.2
BcaB01g01798 Brassica carinata HOM05D002056 ORTHO05D002289 3.4e-14 80.9 50 80.0
BcaC09g51157 Brassica carinata HOM05D002056 ORTHO05D002289 3.4e-14 80.9 50 80.0
C01p16330 Brassica napus HOM05D002056 ORTHO05D002289 3.4e-14 80.9 50 80.0
Cfa000161 Carpinus fangiana HOM05D002056 ORTHO05D002289 3.4e-14 80.9 50 84.0
Gohir.A06G206100 Gossypium hirsutum HOM05D002056 ORTHO05D002289 3.4e-14 80.9 45 88.9
Gohir.D06G215400 Gossypium hirsutum HOM05D002056 ORTHO05D002289 3.4e-14 80.9 45 88.9
Gorai.010G251000 Gossypium raimondii HOM05D002056 ORTHO05D002289 3.4e-14 80.9 45 88.9
PSO541G3543 Papaver somniferum HOM05D002056 ORTHO05D002289 3.4e-14 80.9 51 80.4
PSO675G6209 Papaver somniferum HOM05D002056 ORTHO05D002289 3.4e-14 80.9 51 80.4
Sp7g20310 Schrenkiella parvula HOM05D002056 ORTHO05D002289 3.4e-14 80.9 50 80.0
Thecc.06G228200 Theobroma cacao HOM05D002056 ORTHO05D002289 3.4e-14 80.9 51 82.4
CiPaw.10G074600 Carya illinoinensis HOM05D002056 ORTHO05D002289 4.5e-14 80.5 50 84.0
Thhalv10028833m.g Eutrema salsugineum HOM05D002056 ORTHO05D002289 4.5e-14 80.5 50 80.0
Potri.006G270300 Populus trichocarpa HOM05D002056 ORTHO05D002289 4.5e-14 80.5 51 82.4
Potri.011G011300 Populus trichocarpa HOM05D002056 ORTHO05D002289 4.5e-14 80.5 51 82.4
BolC1t01584H Brassica oleracea HOM05D002056 ORTHO05D002289 7.6e-14 79.7 50 78.0
SGA_v2.0_scaffold4G01893 Striga asiatica HOM05D002056 ORTHO05D002289 7.6e-14 79.7 51 78.4
TWI38G2169 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 7.6e-14 79.7 50 78.0
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.0e-13 79.3 50 78.0
AL7G31540 Arabidopsis lyrata HOM05D002056 ORTHO05D002289 1.0e-13 79.3 50 78.0
Lj6g0024413 Lotus japonicus HOM05D002056 ORTHO05D002289 1.0e-13 79.3 51 80.4
AL6G47830 Arabidopsis lyrata HOM05D002056 ORTHO05D002289 1.3e-13 79.0 50 80.0
A01p13500 Brassica napus HOM05D002056 ORTHO05D002289 1.3e-13 79.0 50 78.0
Sc05g0009450 Simmondsia chinensis HOM05D002056 ORTHO05D002289 1.3e-13 79.0 50 78.0
BraA01t01291Z Brassica rapa HOM05D002056 ORTHO05D002289 1.7e-13 78.6 50 78.0
Thhalv10025821m.g Eutrema salsugineum HOM05D002056 ORTHO05D002289 1.7e-13 78.6 50 78.0
SGA_v2.0_scaffold7G03783 Striga asiatica HOM05D002056 ORTHO05D002289 1.7e-13 78.6 50 76.0
TWI38G1577 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 1.7e-13 78.6 50 78.0
Carub.0006s3212 Capsella rubella HOM05D002056 ORTHO05D002289 2.2e-13 78.2 50 82.0
Sabra04G0002300 Salix brachista HOM05D002056 ORTHO05D002289 2.2e-13 78.2 51 80.4
SalBow8G3803 Salvia bowleyana HOM05D002056 ORTHO05D002289 2.9e-13 77.8 46 84.8
PGSC0003DMG400016724 Solanum tuberosum HOM05D002056 ORTHO05D002289 3.8e-13 77.4 52 78.8
Oeu051883.1 Olea europaea HOM05D002056 ORTHO05D002289 5.0e-13 77.0 44 88.6
GSVIVG01004812001 Vitis vinifera HOM05D002056 ORTHO05D002289 5.0e-13 77.0 50 80.0
Potri.004G004200 Populus trichocarpa HOM05D002056 ORTHO05D002289 6.5e-13 76.6 52 78.8
Haze_06857 Corylus avellana HOM05D002056 ORTHO05D002289 8.4e-13 76.3 44 90.9
Sopen02g025780 Solanum pennellii HOM05D002056 ORTHO05D002289 8.4e-13 76.3 52 76.9
Aa31LG6G4300 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.1e-12 75.9 52 76.9
Sabra11G0008400 Salix brachista HOM05D002056 ORTHO05D002289 1.1e-12 75.9 51 78.4
Sabra11G0010000 Salix brachista HOM05D002056 ORTHO05D002289 1.1e-12 75.9 51 78.4
Sabra11G0011500 Salix brachista HOM05D002056 ORTHO05D002289 1.1e-12 75.9 51 78.4
THA.LOC104813423 Tarenaya hassleriana HOM05D002056 ORTHO05D002289 1.4e-12 75.5 50 78.0
AT4G22150 Arabidopsis thaliana HOM05D002056 ORTHO05D002289 1.9e-12 75.1 50 76.0
QL05p071905 Quercus lobata HOM05D002056 ORTHO05D002289 1.9e-12 75.1 50 78.0
Solyc02g081140.3 Solanum lycopersicum HOM05D002056 ORTHO05D002289 1.9e-12 75.1 52 75.0
arahy.Tifrunner.gnm1.ann1.2A7RP8 Arachis hypogaea HOM05D002056 ORTHO05D002289 3.2e-12 74.3 50 80.0
BcaNung03759 Brassica carinata HOM05D002056 ORTHO05D002289 4.2e-12 73.9 52 75.0
Sed0009660 Sechium edule HOM05D002056 ORTHO05D002289 7.1e-12 73.2 50 78.0
Manes.17G027200 Manihot esculenta HOM05D002056 ORTHO05D002289 9.3e-12 72.8 50 70.0
CSS0017085 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 1.6e-11 72.0 51 74.5
CAN.G1014.48 Capsicum annuum HOM05D002056 ORTHO05D002289 1.6e-11 72.0 51 74.5
CsaV3_1G046080 Cucumis sativus L. HOM05D002056 ORTHO05D002289 2.1e-11 71.6 50 76.0
Lalb_Chr20g0118961 Lupinus albus HOM05D002056 ORTHO05D002289 2.1e-11 71.6 50 78.0
MBI16_g32955_MAGBIO Magnolia biondii HOM05D002056 ORTHO05D002289 2.1e-11 71.6 54 74.1
arahy.Tifrunner.gnm1.ann1.CB7RQG Arachis hypogaea HOM05D002056 ORTHO05D002289 2.7e-11 71.2 50 78.0
FvH4_3g01390 Fragaria vesca HOM05D002056 ORTHO05D002289 2.7e-11 71.2 51 74.5
Phvul.006G145600 Phaseolus vulgaris HOM05D002056 ORTHO05D002289 2.7e-11 71.2 51 76.5
THA.LOC104806317 Tarenaya hassleriana HOM05D002056 ORTHO05D002289 2.7e-11 71.2 50 74.0
ClCG01G009710 Citrullus lanatus HOM05D002056 ORTHO05D002289 3.5e-11 70.9 49 77.6
RcHm_v2.0_Chr5g0002101 Rosa chinensis HOM05D002056 ORTHO05D002289 3.5e-11 70.9 52 73.1
Hund23425 Selenicereus undatus HOM05D002056 ORTHO05D002289 4.6e-11 70.5 52 73.1
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 6.1e-11 70.1 52 75.0
MD09G1112600 Malus domestica HOM05D002056 ORTHO05D002289 6.1e-11 70.1 45 75.6
VMungo0540G1622 Vigna mungo HOM05D002056 ORTHO05D002289 6.1e-11 70.1 51 74.5
FAN21G2569 Fragaria x ananassa HOM05D002056 ORTHO05D002289 7.9e-11 69.7 52 71.2
FAN25G3859 Fragaria x ananassa HOM05D002056 ORTHO05D002289 7.9e-11 69.7 52 71.2
Lalb_Chr15g0087761 Lupinus albus HOM05D002056 ORTHO05D002289 7.9e-11 69.7 51 78.4
MD17G1102700 Malus domestica HOM05D002056 ORTHO05D002289 7.9e-11 69.7 45 75.6
CANSAT56G0981 Cannabis sativa HOM05D002056 ORTHO05D002289 1.3e-10 68.9 50 76.0
Hma1.2p1_0177F.1_g077880 Hydrangea macrophylla HOM05D002056 ORTHO05D002289 1.3e-10 68.9 51 68.6
Lalb_Chr18g0056591 Lupinus albus HOM05D002056 ORTHO05D002289 1.3e-10 68.9 51 74.5
Cc09_g01180 Coffea canephora HOM05D002056 ORTHO05D002289 1.8e-10 68.6 54 74.1
Dinv39741 Davidia involucrata HOM05D002056 ORTHO05D002289 2.3e-10 68.2 51 70.6
MELO3C021721.2 Cucumis melo HOM05D002056 ORTHO05D002289 3.0e-10 67.8 44 84.1
Lj8A129T92 Lonicera japonica HOM05D002056 ORTHO05D002289 3.9e-10 67.4 46 73.9
Hund21437 Selenicereus undatus HOM05D002056 ORTHO05D002289 3.9e-10 67.4 57 66.7
Ca_00693_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Ca_00694_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Glyma.09G007600 Glycine max HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Glyma.15G112000 Glycine max HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Medtr2g024420 Medicago truncatula HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Nitab4.5_0007492g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 5.1e-10 67.0 55 69.1
Phvul.006G145700 Phaseolus vulgaris HOM05D002056 ORTHO05D002289 5.1e-10 67.0 51 72.5
Cpa.g.sc132.9 Carica papaya HOM05D002056 ORTHO05D002289 6.7e-10 66.6 51 64.7
Lj4g0001049 Lotus japonicus HOM05D002056 ORTHO05D002289 6.7e-10 66.6 52 73.1
Psat1g178600 Pisum sativum HOM05D002056 ORTHO05D002289 1.1e-09 65.9 51 70.6
TPR.G13148 Trifolium pratense HOM05D002056 ORTHO05D002289 1.1e-09 65.9 51 70.6
EL10Ac8g20130 Beta vulgaris HOM05D002056 ORTHO05D002289 1.5e-09 65.5 54 72.2
Actinidia03597 Actinidia chinensis HOM05D002056 ORTHO05D002289 1.9e-09 65.1 48 70.8
Prupe.3G212000 Prunus persica HOM05D002056 ORTHO05D002289 1.9e-09 65.1 45 71.1
SEGI_39744 Sequoiadendron giganteum HOM05D002056 ORTHO05D002289 2.5e-09 64.7 50 72.0
CSS0018929 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 4.3e-09 63.9 50 68.0
AUR62012758 Chenopodium quinoa HOM05D002056 ORTHO05D002289 5.7e-09 63.5 49 73.5
AUR62021900 Chenopodium quinoa HOM05D002056 ORTHO05D002289 5.7e-09 63.5 49 73.5
TAR626G1012 Trochodendron aralioides HOM05D002056 ORTHO05D002289 5.7e-09 63.5 46 71.7
PGR042G2348 Punica granatum HOM05D002056 ORTHO05D002289 7.4e-09 63.2 51 64.7
Nitab4.5_0008906g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 9.7e-09 62.8 55 65.5
Ah.14g087840 Amaranthus hybridus HOM05D002056 ORTHO05D002289 1.3e-08 62.4 49 71.4
MD10G1326800 Malus domestica HOM05D002056 ORTHO05D002289 1.6e-08 62.0 42 76.2
Nitab4.5_0000005g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 2.2e-08 61.6 45 75.6
Dinv08731 Davidia involucrata HOM05D002056 ORTHO05D002289 2.8e-08 61.2 51 64.7
MD05G1352600 Malus domestica HOM05D002056 ORTHO05D002289 2.8e-08 61.2 42 76.2
CSS0002860 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 3.7e-08 60.8 47 70.2
Nitab4.5_0002668g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 6.3e-08 60.1 45 77.8
Ah.09g234510 Amaranthus hybridus HOM05D002056 ORTHO05D002289 8.2e-08 59.7 49 69.4
Aqoxy1G03510 Aquilegia oxysepala HOM05D002056 ORTHO05D002289 1.1e-07 59.3 50 66.0
arahy.Tifrunner.gnm1.ann1.P08TCF Arachis hypogaea HOM05D002056 ORTHO05D002289 1.1e-07 59.3 51 66.7
ClCG02G010070 Citrullus lanatus HOM05D002056 ORTHO05D002289 1.1e-07 59.3 50 64.0
MELO3C019307.2 Cucumis melo HOM05D002056 ORTHO05D002289 1.1e-07 59.3 50 64.0
Peaxi162Scf00708g00211 Petunia axillaris HOM05D002056 ORTHO05D002289 1.4e-07 58.9 45 71.1
LjContig00564g0000978 Lotus japonicus HOM05D002056 ORTHO05D002289 1.8e-07 58.5 53 58.5
Mapoly0101s0027 Marchantia polymorpha HOM05D002056 ORTHO05D002289 2.4e-07 58.2 49 65.3
RcHm_v2.0_Chr2g0158411 Rosa chinensis HOM05D002056 ORTHO05D002289 2.4e-07 58.2 53 64.2
ATR0059G027 Amborella trichopoda HOM05D002056 ORTHO05D002289 3.1e-07 57.8 50 64.0
QL08p031047 Quercus lobata HOM05D002056 ORTHO05D002289 3.1e-07 57.8 34 76.5
arahy.Tifrunner.gnm1.ann1.8B4PAD Arachis hypogaea HOM05D002056 ORTHO05D002289 4.1e-07 57.4 46 67.4
Lsat_1_v5_gn_7_92681 Lactuca sativa HOM05D002056 ORTHO05D002289 4.1e-07 57.4 47 70.2
COL.COLO4_27125 Corchorus olitorius HOM05D002056 ORTHO05D002289 6.9e-07 56.6 35 85.7
FAN02G0342 Fragaria x ananassa HOM05D002056 ORTHO05D002289 6.9e-07 56.6 53 62.3
FAN05G0472 Fragaria x ananassa HOM05D002056 ORTHO05D002289 6.9e-07 56.6 53 62.3
unitig_32.g11536 Utricularia gibba HOM05D002056 ORTHO05D002289 6.9e-07 56.6 50 62.0
GSVIVG01030489001 Vitis vinifera HOM05D002056 ORTHO05D002289 6.9e-07 56.6 39 74.4
Eucgr.A01098 Eucalyptus grandis HOM05D002056 ORTHO05D002289 9.0e-07 56.2 36 72.2
FAN09G3282 Fragaria x ananassa HOM05D002056 ORTHO05D002289 9.0e-07 56.2 53 62.3
TWI18G0856 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 9.0e-07 56.2 51 58.8
FvH4_6g42560 Fragaria vesca HOM05D002056 ORTHO05D002289 1.2e-06 55.8 53 62.3
Glyma.02G270000 Glycine max HOM05D002056 ORTHO05D002289 1.2e-06 55.8 48 64.6
HPP92_004737 Vanilla planifolia HOM05D002056 ORTHO05D002289 1.2e-06 55.8 51 60.8
CANSAT64G0919 Cannabis sativa HOM05D002056 ORTHO05D002289 1.5e-06 55.5 50 62.0
Haze_12780 Corylus avellana HOM05D002056 ORTHO05D002289 2.0e-06 55.1 49 61.2
COL.COLO4_21860 Corchorus olitorius HOM05D002056 ORTHO05D002289 3.4e-06 54.3 49 61.2
Peaxi162Scf00921g00138 Petunia axillaris HOM05D002056 ORTHO05D002289 3.4e-06 54.3 41 63.4
COL.COLO4_00207 Corchorus olitorius HOM05D002056 ORTHO05D002289 4.5e-06 53.9 35 82.9
FAN14G5477 Fragaria x ananassa HOM05D002056 ORTHO05D002289 4.5e-06 53.9 53 60.4
Nitab4.5_0000482g0150 Nicotiana tabacum HOM05D002056 ORTHO05D002289 4.5e-06 53.9 41 65.9
Nitab4.5_0003449g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 4.5e-06 53.9 41 65.9
RcHm_v2.0_Chr5g0032521 Rosa chinensis HOM05D001112 ORTHO05D000996 4.5e-06 53.9 47 68.1
Sed0028179 Sechium edule HOM05D002056 ORTHO05D002289 4.5e-06 53.9 50 62.0
TWI75G1065 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 4.5e-06 53.9 51 54.9
Thecc.01G180700 Theobroma cacao HOM05D002056 ORTHO05D002289 7.7e-06 53.1 49 57.1
TPR.G14456 Trifolium pratense HOM05D002056 ORTHO05D002289 7.7e-06 53.1 48 60.4
Cfa014328 Carpinus fangiana HOM05D002056 ORTHO05D002289 1.0e-05 52.8 49 59.2
DCAR_021145 Daucus carota HOM05D002056 ORTHO05D002289 1.0e-05 52.8 46 60.9
Rhsim06G0166500 Rhododendron simsii HOM05D002056 ORTHO05D002289 1.0e-05 52.8 52 63.5


User provided reference genes

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