Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-195 685.6 386 100.0
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.0e-88 329.7 393 55.5
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-88 328.9 394 55.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.4e-85 320.9 399 55.9
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.4e-85 320.9 413 52.8
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.0e-85 319.3 395 55.2
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.4e-84 315.8 393 53.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 7.6e-84 315.1 403 53.8
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.7e-83 313.9 404 54.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.2e-82 309.7 403 54.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 5.4e-82 308.9 366 54.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.3e-82 308.1 395 52.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.1e-81 307.0 395 53.7
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.0e-81 305.4 398 52.5
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.0e-81 305.4 401 51.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.3e-80 304.3 402 51.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.3e-80 304.3 414 51.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.7e-80 303.9 393 53.2
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 7.3e-79 298.5 394 53.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 9.6e-79 298.1 403 50.4
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.6e-78 296.2 397 52.4
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 4.8e-78 295.8 398 50.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.4e-77 294.3 395 50.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.8e-77 293.9 340 56.8
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.4e-77 293.5 407 49.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.1e-77 293.1 401 50.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 4.0e-77 292.7 397 50.6
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.2e-76 291.2 401 51.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.0e-76 290.4 394 51.3
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.6e-76 290.0 339 57.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.7e-75 287.3 387 50.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-74 284.6 394 50.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.4e-74 284.3 426 46.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.4e-74 284.3 395 51.4
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.9e-74 283.9 392 49.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.9e-74 283.9 403 51.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.2e-74 282.7 405 48.9
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 9.3e-74 281.6 387 53.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.6e-73 279.3 390 49.2
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 7.9e-73 278.5 410 48.3
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.0e-72 278.1 401 50.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.3e-72 277.7 415 48.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 5.1e-72 275.8 426 46.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.5e-71 274.2 408 47.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 9.6e-71 271.6 331 54.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.3e-70 271.2 327 53.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 6.2e-70 268.9 405 47.7
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.3e-69 265.8 262 61.1
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.3e-69 265.8 398 46.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 9.0e-69 265.0 390 47.9
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.6e-68 263.5 390 48.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.6e-68 263.5 415 48.7
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-67 261.2 356 51.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.8e-67 259.6 342 51.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.8e-67 259.6 408 50.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.2e-66 256.5 384 49.0
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.5e-65 253.1 342 50.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-65 252.7 313 54.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.3e-64 251.1 342 50.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.1e-64 249.2 348 49.1
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 8.7e-64 248.4 384 46.9
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.1e-63 248.1 377 46.9
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.5e-63 247.7 372 48.9
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.5e-63 246.9 404 45.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.5e-63 246.9 420 44.3
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.3e-63 246.5 377 46.7
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.4e-63 245.4 399 45.9
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.4e-63 245.4 393 47.8
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.1e-62 243.8 364 50.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.8e-62 243.4 377 46.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 8.2e-62 241.9 395 45.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-61 241.1 412 45.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-60 238.0 401 43.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.6e-60 236.9 401 46.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.8e-60 235.7 397 44.8
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.0e-59 235.0 397 44.8
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.2e-59 233.8 401 46.1
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.8e-59 233.0 389 47.0
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.5e-59 232.3 322 47.5
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.5e-59 232.3 383 45.7
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 8.4e-59 231.9 322 48.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.5e-58 230.3 367 47.1
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.0e-56 224.9 393 43.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.9e-55 220.7 403 44.7
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.3e-55 219.9 393 43.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.3e-55 219.9 390 43.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 4.3e-55 219.5 408 43.1
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.0e-51 208.4 397 41.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.7e-51 207.6 401 42.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.2e-51 207.2 397 41.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 6.5e-51 205.7 400 43.2
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.5e-51 205.7 389 42.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 8.5e-51 205.3 380 43.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.9e-50 204.1 391 41.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.2e-50 203.4 380 42.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 9.4e-50 201.8 381 43.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.6e-49 201.1 357 45.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.7e-49 200.3 380 43.7
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.7e-49 200.3 396 41.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 3.6e-49 199.9 316 47.2
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.6e-49 199.5 380 43.4
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.4e-48 198.0 376 43.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.4e-48 198.0 376 43.4
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.8e-48 197.6 376 43.4
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 8.8e-48 195.3 393 40.2
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 3.3e-47 193.4 375 42.9
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.2e-46 190.7 287 47.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.8e-46 190.3 255 52.9
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 3.1e-45 186.8 332 44.9
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.1e-45 186.8 390 40.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.4e-44 183.3 319 44.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 5.9e-44 182.6 218 54.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 7.7e-44 182.2 188 56.9
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.4e-42 177.9 401 39.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 4.2e-42 176.4 298 46.6
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.2e-42 175.6 268 49.3
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.2e-42 175.6 268 49.3
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.1e-41 174.1 402 38.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 7.4e-39 165.6 266 46.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.8e-37 161.0 422 37.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 3.1e-37 160.2 236 47.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.1e-37 160.2 393 38.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 9.1e-37 158.7 395 39.5
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.2e-34 149.8 394 38.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.3e-32 144.1 340 35.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.9e-32 143.3 389 38.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.6e-31 140.6 230 48.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 5.3e-29 132.9 192 48.4
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.6e-28 130.6 106 68.9
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 7.2e-26 122.5 116 62.9
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.1e-25 120.9 384 34.4
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.0e-25 119.0 125 56.0
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-21 106.7 197 46.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-21 106.7 197 46.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.5e-20 103.6 135 48.9
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.3e-19 101.7 233 36.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-19 100.9 210 44.3
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.7e-14 83.6 189 40.7
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 8.3e-14 82.4 70 68.6
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 6.6e-11 72.8 128 39.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-09 68.6 196 37.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-09 67.8 196 37.8
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-09 67.4 199 37.2
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-09 67.0 196 37.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-09 67.0 196 37.8
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 8.0e-09 65.9 77 58.4
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.0e-08 65.5 144 38.9
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-08 63.2 196 36.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.3e-06 58.5 104 42.3


User provided reference genes

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