Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 3.8e-28 127.5 65 100.0
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 1.7e-20 102.1 60 81.7
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.2e-20 101.7 58 84.5
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.2e-20 101.7 58 84.5
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 3.8e-20 100.9 55 87.3
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 3.8e-20 100.9 64 75.0
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.8e-20 100.9 61 82.0
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 6.5e-20 100.1 60 80.0
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 8.4e-20 99.8 64 73.4
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 8.4e-20 99.8 62 77.4
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 1.1e-19 99.4 64 73.4
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.9e-19 98.6 61 80.3
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.9e-19 98.6 61 77.0
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.9e-19 98.6 61 77.0
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.9e-19 98.6 61 77.0
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.5e-19 98.2 64 73.4
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 2.5e-19 98.2 64 73.4
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.5e-19 98.2 55 85.5
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 3.2e-19 97.8 64 71.9
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 3.2e-19 97.8 64 71.9
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 3.2e-19 97.8 64 76.6
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 3.2e-19 97.8 60 81.7
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.2e-19 97.8 64 71.9
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 4.2e-19 97.4 64 71.9
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 4.2e-19 97.4 64 78.1
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 5.5e-19 97.1 64 76.6
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 5.5e-19 97.1 60 75.0
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 5.5e-19 97.1 61 75.4
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 5.5e-19 97.1 61 75.4
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 5.5e-19 97.1 61 75.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 5.5e-19 97.1 61 75.4
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 5.5e-19 97.1 55 83.6
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 7.1e-19 96.7 56 83.9
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 7.1e-19 96.7 55 83.6
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 7.1e-19 96.7 57 82.5
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 7.1e-19 96.7 64 73.4
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 9.3e-19 96.3 63 76.2
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 9.3e-19 96.3 59 78.0
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 9.3e-19 96.3 59 78.0
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 9.3e-19 96.3 64 75.0
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 9.3e-19 96.3 59 79.7
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 9.3e-19 96.3 55 83.6
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 9.3e-19 96.3 64 75.0
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.2e-18 95.9 55 81.8
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.2e-18 95.9 59 79.7
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.2e-18 95.9 64 70.3
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 1.2e-18 95.9 55 81.8
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.6e-18 95.5 58 77.6
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 2.1e-18 95.1 61 73.8
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 2.1e-18 95.1 61 78.7
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.7e-18 94.7 59 76.3
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.7e-18 94.7 59 76.3
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 2.7e-18 94.7 64 73.4
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 2.7e-18 94.7 64 73.4
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 3.5e-18 94.4 64 70.3
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.5e-18 94.4 61 75.4
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 3.5e-18 94.4 64 71.9
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 4.6e-18 94.0 63 76.2
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 4.6e-18 94.0 59 74.6
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 6.0e-18 93.6 64 70.3
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 7.9e-18 93.2 64 75.0
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 7.9e-18 93.2 64 75.0
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 7.9e-18 93.2 55 81.8
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 7.9e-18 93.2 64 71.9
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 1.0e-17 92.8 59 76.3
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.0e-17 92.8 64 71.9
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.3e-17 92.4 61 73.8
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 1.8e-17 92.0 57 77.2
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 2.3e-17 91.7 55 81.8
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 3.0e-17 91.3 55 76.4
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 3.0e-17 91.3 58 74.1
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 3.0e-17 91.3 61 72.1
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 3.9e-17 90.9 57 80.7
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 3.9e-17 90.9 64 68.8
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 5.1e-17 90.5 64 67.2
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 5.1e-17 90.5 64 71.9
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.1e-16 89.4 55 80.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 1.5e-16 89.0 55 80.0
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.5e-16 89.0 55 78.2
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 1.5e-16 89.0 64 71.9
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 3.3e-16 87.8 64 70.3
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 3.3e-16 87.8 64 70.3
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 3.3e-16 87.8 64 70.3
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 5.7e-16 87.0 56 80.4
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 5.7e-16 87.0 56 80.4
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 7.4e-16 86.7 64 70.3
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 7.4e-16 86.7 64 70.3
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 7.4e-16 86.7 57 78.9
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 9.6e-16 86.3 63 69.8
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.3e-15 85.9 55 74.5
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.3e-15 85.9 55 74.5
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.3e-15 85.9 55 74.5
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 1.3e-15 85.9 55 76.4
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 1.6e-15 85.5 64 68.8
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 6.3e-15 83.6 63 68.3
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 6.3e-15 83.6 50 80.0
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 6.3e-15 83.6 55 78.2
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 8.2e-15 83.2 55 76.4
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 4.1e-14 80.9 49 79.6
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 1.5e-13 79.0 58 67.2
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.5e-13 79.0 62 67.7
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 4.5e-13 77.4 46 76.1
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 1.3e-12 75.9 47 72.3
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.3e-12 75.9 65 64.6
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 3.8e-12 74.3 41 87.8
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 5.0e-12 73.9 61 59.0
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 3.9e-09 64.3 46 65.2
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 8.7e-09 63.2 43 69.8
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 2.5e-08 61.6 45 64.4


User provided reference genes

Program Settings