Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.3e-43 179.5 100 100.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 9.0e-29 130.2 99 71.7
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.4e-27 123.6 100 75.0
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.7e-25 118.6 99 71.7
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.3e-24 116.3 101 70.3
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 5.1e-24 114.4 99 64.6
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.1e-23 113.2 100 71.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.5e-23 112.1 99 65.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.5e-23 112.1 99 65.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 4.3e-23 111.3 100 70.0
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 5.6e-23 110.9 102 66.7
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 9.6e-23 110.2 100 64.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 3.6e-22 108.2 103 68.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.6e-22 108.2 100 66.0
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.8e-22 107.8 99 60.6
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.4e-21 106.3 101 64.4
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 1.8e-21 105.9 100 67.0
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.8e-21 105.9 99 60.6
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.8e-21 105.9 100 65.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.4e-21 105.5 99 60.6
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.0e-21 104.8 99 59.6
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.0e-21 104.8 99 59.6
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 4.0e-21 104.8 99 59.6
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 5.3e-21 104.4 100 67.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 6.9e-21 104.0 100 64.0
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.2e-20 103.2 104 64.4
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.6e-20 102.1 101 58.4
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.6e-20 102.1 96 57.3
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 3.4e-20 101.7 100 65.0
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 5.8e-20 100.9 100 65.0
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.3e-19 99.8 102 66.7
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.2e-19 99.0 101 62.4
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 8.4e-19 97.1 106 62.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 8.4e-19 97.1 100 58.0
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 5.4e-18 94.4 84 65.5
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 7.1e-18 94.0 101 62.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 7.1e-18 94.0 99 55.6
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 7.1e-18 94.0 84 63.1
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 9.3e-18 93.6 101 56.4
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.2e-17 93.2 103 63.1
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.8e-16 89.4 103 60.2
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 3.0e-16 88.6 103 60.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.1e-16 87.8 98 54.1
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 5.1e-16 87.8 98 54.1
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.5e-15 86.3 101 58.4
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.3e-15 85.1 99 56.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.1e-14 82.4 101 59.4
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 3.7e-14 81.6 99 53.5
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.4e-13 79.7 100 53.0
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 2.4e-13 79.0 100 47.0
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 2.4e-13 79.0 99 53.5
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.2e-12 76.6 101 52.5
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.5e-12 76.3 67 73.1
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.0e-11 73.6 70 68.6
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 1.3e-11 73.2 100 52.0
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.3e-11 73.2 101 51.5
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 1.3e-11 73.2 65 67.7
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.3e-11 73.2 107 54.2
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.3e-11 73.2 100 55.0
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.3e-11 73.2 105 55.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.3e-11 73.2 105 55.2
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.7e-11 72.8 107 56.1
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 2.9e-11 72.0 100 56.0
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 4.9e-11 71.2 100 52.0
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.4e-10 69.7 101 52.5
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.9e-10 69.3 102 53.9
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 4.2e-10 68.2 88 58.0
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.1e-10 67.4 107 54.2
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.2e-09 66.6 51 64.7
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 1.2e-09 66.6 100 46.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.5e-09 65.1 90 50.0
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 3.5e-09 65.1 107 53.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 6.0e-09 64.3 100 47.0
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 6.0e-09 64.3 112 46.4
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.3e-08 63.2 121 43.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.8e-08 62.8 80 57.5
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.1e-07 60.1 54 64.8
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.9e-07 59.3 102 48.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.9e-07 59.3 58 60.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.9e-07 59.3 90 42.2
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.5e-07 58.9 65 47.7
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 5.7e-07 57.8 126 40.5
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 5.7e-07 57.8 126 40.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 9.6e-07 57.0 52 65.4
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 2.8e-06 55.5 90 48.9
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 2.8e-06 55.5 90 48.9
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.8e-06 55.5 53 64.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 4.8e-06 54.7 89 49.4
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 6.2e-06 54.3 81 55.6


User provided reference genes

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