Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 2055.8 1040 100.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1338.6 1032 68.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 1306.2 1076 63.2
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 1297.0 1078 61.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 1282.7 1078 62.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 1275.0 1079 61.4
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 1270.0 1079 62.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 1269.6 1102 61.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 1269.6 1079 60.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1267.7 1079 61.4
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 1266.1 1081 61.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 1263.4 1078 61.3
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 1261.9 1080 60.7
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1261.9 1081 61.1
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 1260.7 1073 60.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 1259.6 1078 60.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 1259.6 1081 60.9
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 1258.4 1080 61.0
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1255.4 1068 61.4
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 1254.2 1121 58.5
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1253.4 1081 59.4
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 1253.0 1079 60.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1252.3 1080 59.3
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1252.3 1069 60.9
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 1251.5 1080 60.0
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1249.6 1079 60.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 1249.2 1075 59.8
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 1248.0 1079 60.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1247.6 1076 60.3
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 1243.0 1068 60.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 1242.6 1080 59.1
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1241.1 1080 59.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 1239.9 1072 60.4
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 1238.8 1078 59.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 1231.5 1143 57.5
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 1230.3 1076 59.2
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1228.8 1092 58.9
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1227.6 1077 59.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1226.5 1065 60.3
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 1226.1 1073 60.5
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 1224.9 1077 59.2
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1222.2 1079 58.8
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1221.1 1089 58.5
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1220.3 1079 58.9
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 1218.0 1078 58.4
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 1216.4 1102 58.0
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1215.3 1079 58.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1211.8 1089 58.1
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 1211.8 1080 58.7
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 1211.4 1075 58.9
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 1208.7 1081 57.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 1206.4 1077 59.5
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 1206.0 1073 58.5
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1205.7 1074 58.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 1204.9 1077 58.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 1203.0 1075 58.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 1202.2 1073 58.4
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 1201.8 1080 58.1
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1201.0 974 62.8
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1199.5 1072 58.1
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1198.3 1081 58.5
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 1195.3 1075 58.1
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1194.5 1073 57.7
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1190.3 1072 57.8
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1188.7 1077 57.5
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 1187.2 1075 57.8
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1186.8 1072 57.6
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1186.4 1077 57.3
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1186.0 1169 55.2
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1185.6 1072 57.6
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 1181.4 1085 57.5
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 1180.6 1073 57.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1179.1 1094 56.3
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1175.2 1077 57.4
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 1173.7 1069 57.5
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1172.9 1075 56.9
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1172.1 976 62.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1165.2 1083 56.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1164.1 1080 56.9
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 1161.7 1106 56.2
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1159.1 1080 57.9
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1158.7 1080 56.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1158.3 1080 56.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1157.1 1078 57.8
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 1152.1 977 62.2
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 1142.1 1087 56.7
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1132.1 1063 56.9
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1130.5 1084 56.5
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 1128.2 990 60.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1122.1 1370 48.0
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1111.7 979 59.0
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1110.9 1051 56.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1097.0 1073 53.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 1092.4 1386 46.2
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1079.3 1121 52.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1078.5 1024 55.5
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 1.4e-302 1043.1 924 59.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 2.4e-302 1042.3 1061 53.5
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 2.6e-288 995.7 960 55.1
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.0e-268 930.6 796 61.1
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 6.5e-255 884.8 728 62.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 2.8e-242 842.8 1059 45.5
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 2.4e-241 839.7 1081 45.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 1.9e-238 830.1 1074 43.3
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 1.6e-205 720.7 811 50.4
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.7e-205 719.2 672 56.2
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.5e-182 644.4 629 55.6
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 6.6e-175 619.0 528 61.4
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.9e-174 617.5 594 55.6
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 3.1e-164 583.6 1069 38.1
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-163 581.6 501 60.3
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.6e-149 534.6 511 55.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.3e-143 514.2 546 53.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 8.2e-125 452.6 333 67.3
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.1e-100 370.5 308 60.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.5e-98 362.8 312 59.6
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-92 345.9 366 52.2
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.0e-90 339.3 316 55.7
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 7.2e-89 333.2 314 56.7
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.8e-87 328.6 362 50.0
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.9e-83 313.5 293 57.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 9.8e-78 296.2 393 44.5
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 6.0e-75 287.0 284 54.2
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.1e-63 248.1 161 72.7
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.4e-60 237.3 158 72.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 4.0e-55 221.1 211 57.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 6.6e-42 177.2 211 46.0
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 4.3e-41 174.5 141 60.3
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 5.8e-38 164.1 142 58.5
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.9e-37 161.0 149 53.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.1e-34 151.0 102 69.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 7.4e-33 147.1 106 66.0
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 9.6e-33 146.7 98 69.4
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.8e-31 142.5 91 73.6
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.2e-29 135.6 130 54.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.5e-28 132.1 118 53.4
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.5e-28 131.0 205 42.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.1e-27 129.0 139 54.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.8e-23 115.9 101 59.4
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.2e-21 109.0 84 59.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-18 99.4 143 38.5
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-18 99.0 143 38.5
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-18 99.0 143 38.5
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-18 99.0 143 38.5
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-18 99.0 143 38.5
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-18 99.0 143 38.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-18 98.6 143 37.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.5e-17 96.3 143 37.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-14 86.3 108 47.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.0e-14 85.9 108 47.2
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-13 83.6 131 38.2
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-13 83.2 131 38.2
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.3e-13 83.2 84 56.0
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.8e-13 81.6 100 49.0
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 1.1e-12 80.1 106 45.3
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.6e-11 76.3 98 46.9
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.7e-11 75.5 81 54.3
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 3.0e-10 72.0 49 63.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.0e-10 72.0 48 68.8
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 6.7e-10 70.9 51 64.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-09 68.2 54 57.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-08 66.6 54 53.7


User provided reference genes

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