Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.2e-117 423.7 209 100.0
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.2e-83 313.5 219 71.7
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.6e-82 307.8 250 63.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.5e-81 306.6 249 63.1
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.9e-81 306.2 247 65.2
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.9e-81 306.2 250 65.6
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.9e-81 306.2 233 65.7
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.2e-81 305.1 248 64.5
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 9.5e-81 303.9 250 64.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.6e-80 303.1 250 63.6
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.7e-80 301.6 250 64.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 6.1e-80 301.2 250 63.2
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 8.0e-80 300.8 245 62.9
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.4e-79 300.1 251 61.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.3e-79 299.3 251 62.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.0e-78 296.2 251 61.4
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.0e-78 296.2 250 62.4
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.0e-78 296.2 251 62.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.4e-78 295.0 247 61.9
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 5.7e-78 294.7 251 60.6
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 5.7e-78 294.7 249 60.6
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.3e-77 293.5 250 61.2
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.7e-77 293.1 250 60.8
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.2e-77 292.7 252 60.7
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.2e-77 292.7 251 61.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.8e-77 292.4 245 60.4
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.8e-77 292.4 245 60.4
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 4.9e-77 291.6 251 61.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 6.3e-77 291.2 251 61.4
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.4e-76 290.0 250 59.6
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.8e-76 289.7 258 60.1
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.8e-76 289.7 249 59.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.1e-76 288.9 253 58.5
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 4.1e-76 288.5 250 61.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 4.1e-76 288.5 250 59.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 5.4e-76 288.1 251 61.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 9.2e-76 287.3 250 61.6
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.2e-76 287.3 250 61.6
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 9.2e-76 287.3 251 61.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.2e-75 287.0 245 59.6
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.2e-75 287.0 250 59.2
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.6e-75 286.6 250 61.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.6e-75 286.6 245 61.2
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.6e-75 286.6 251 61.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.0e-75 286.2 251 59.4
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.7e-75 285.8 252 59.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.7e-75 285.8 247 61.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.5e-75 285.0 252 59.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 4.5e-75 285.0 252 56.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 4.5e-75 285.0 251 59.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.5e-75 285.0 244 60.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.5e-75 285.0 253 58.5
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 4.5e-75 285.0 248 60.9
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.9e-75 284.6 251 59.8
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.9e-75 284.6 250 60.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 7.8e-75 284.3 250 60.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 7.8e-75 284.3 251 59.8
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.0e-74 283.9 209 70.3
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.0e-74 283.9 253 60.5
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.3e-74 283.5 252 59.9
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-74 283.5 247 61.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.3e-74 283.5 252 58.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.7e-74 283.1 251 61.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.3e-74 282.7 250 59.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.3e-74 282.7 251 59.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-74 282.3 251 59.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.9e-74 282.0 250 60.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 8.6e-74 280.8 251 59.8
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 8.6e-74 280.8 251 59.4
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.1e-73 280.4 251 59.4
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.1e-73 280.4 250 59.2
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.5e-73 280.0 243 59.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.5e-73 280.0 251 61.0
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.9e-73 279.6 244 58.2
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-73 279.3 251 59.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.5e-73 279.3 251 59.0
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.3e-73 278.9 249 59.0
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.3e-73 278.9 249 59.0
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.3e-73 278.9 253 56.9
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 3.3e-73 278.9 248 58.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 3.3e-73 278.9 253 57.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.3e-73 278.5 253 56.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 5.6e-73 278.1 251 58.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 5.6e-73 278.1 250 59.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.2e-72 276.9 251 59.4
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.2e-72 276.9 253 56.1
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-72 276.9 253 58.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.6e-72 276.6 249 58.6
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.7e-72 275.0 251 57.8
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 6.1e-72 274.6 251 58.2
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 6.1e-72 274.6 253 56.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.0e-71 273.9 251 58.2
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-71 272.7 252 55.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.3e-71 272.7 250 57.6
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.0e-71 271.9 244 59.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.0e-71 271.9 253 58.5
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.8e-71 271.2 251 55.8
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-70 270.4 275 54.2
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-70 270.4 275 54.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.5e-70 270.0 244 57.4
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.6e-70 269.2 253 58.1
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.6e-70 269.2 246 59.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.8e-70 268.1 242 55.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 7.5e-70 267.7 244 59.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 7.5e-70 267.7 244 59.0
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.7e-69 266.5 242 55.8
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.7e-69 266.5 251 57.4
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.7e-69 266.5 250 56.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.9e-69 265.8 244 58.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.7e-69 265.4 252 56.7
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.7e-69 265.4 242 56.2
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 7.8e-67 257.7 243 56.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.7e-66 256.5 243 56.8
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.3e-66 256.1 250 54.8
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.0e-66 255.8 292 50.0
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 8.6e-66 254.2 228 58.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.3e-65 251.9 222 59.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.1e-63 245.7 246 52.8
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.2e-63 245.0 226 58.4
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 8.9e-63 244.2 240 54.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.2e-62 243.8 292 49.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.3e-61 240.4 133 88.0
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.9e-60 236.5 245 53.5
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.4e-60 236.1 250 52.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.1e-60 235.3 250 52.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 4.1e-60 235.3 254 50.8
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 5.4e-60 235.0 133 85.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.5e-59 232.3 236 53.4
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.3e-58 230.3 131 84.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.3e-58 230.3 131 84.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.8e-56 222.6 133 78.9
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.6e-56 222.2 202 59.4
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.4e-55 220.3 133 78.2
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 4.6e-43 178.7 133 60.9
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 3.3e-41 172.6 186 53.2
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.3e-40 170.6 110 74.5
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.8e-40 169.5 183 52.5
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 8.1e-40 167.9 134 61.2
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.4e-36 156.4 88 86.4
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.6e-35 153.7 134 58.2
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.4e-28 128.6 145 52.4
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.4e-28 128.6 145 52.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.8e-26 123.6 181 44.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 2.5e-25 119.8 63 85.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-25 119.8 108 65.7
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.2e-22 110.9 99 51.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 3.8e-21 105.9 69 79.7
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-20 104.4 99 57.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-20 104.4 99 57.6
DCAR_005097 Daucus carota HOM05D004292 ORTHO05D175982 4.2e-20 102.4 178 39.9
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.5e-17 94.0 131 38.2
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.3e-17 92.4 94 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.2e-14 84.3 155 33.5
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.0e-10 69.7 80 55.0
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-09 67.4 51 62.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.2e-08 63.5 188 28.2
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.1e-07 59.7 38 73.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 4.1e-07 59.3 54 59.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 1.5e-06 57.4 31 80.6


User provided reference genes

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