Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 9.8e-150 533.5 278 100.0
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.9e-116 422.9 225 96.9
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.1e-115 419.5 225 94.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.5e-113 413.3 225 92.9
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.1e-112 409.5 225 91.1
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 8.1e-112 407.5 225 91.6
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.8e-111 406.4 225 90.2
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.8e-111 406.4 225 91.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.2e-110 403.7 223 91.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.5e-110 403.3 225 88.4
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.5e-110 403.3 225 88.4
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.0e-110 402.9 225 90.2
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 4.4e-110 401.7 225 89.8
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 4.4e-110 401.7 225 90.2
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 5.8e-110 401.4 225 90.2
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 7.6e-110 401.0 225 88.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 7.6e-110 401.0 225 88.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 9.9e-110 400.6 225 90.2
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.7e-109 399.8 225 89.3
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.7e-109 399.8 225 89.3
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 2.2e-109 399.4 225 89.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 2.2e-109 399.4 225 88.9
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.2e-109 399.4 225 89.8
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.9e-109 399.1 225 89.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.9e-109 399.1 225 90.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.9e-109 399.1 225 90.2
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.8e-109 398.7 228 88.2
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.8e-109 398.7 225 89.8
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 3.8e-109 398.7 225 89.3
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 6.4e-109 397.9 225 88.4
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 8.4e-109 397.5 225 88.9
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 8.4e-109 397.5 225 89.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.4e-108 396.7 225 89.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.4e-108 396.7 225 89.3
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.4e-108 396.7 225 88.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.4e-108 396.7 225 88.9
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.9e-108 396.4 225 87.1
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 2.4e-108 396.0 223 89.7
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.4e-108 396.0 225 89.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 3.2e-108 395.6 225 88.4
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 3.2e-108 395.6 225 88.0
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 3.2e-108 395.6 225 86.7
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 4.2e-108 395.2 225 88.4
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 4.2e-108 395.2 225 88.9
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 4.2e-108 395.2 225 88.4
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 4.2e-108 395.2 225 87.1
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 9.2e-108 394.0 225 89.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.4
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 88.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.2e-107 393.7 225 87.1
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.6e-107 393.3 225 87.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.6e-107 393.3 225 88.0
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.6e-107 393.3 225 88.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-107 392.5 225 88.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.7e-107 392.5 225 88.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-107 392.5 225 88.0
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.5e-107 392.1 225 87.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.5e-107 392.1 225 86.2
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.5e-107 392.1 225 86.2
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.5e-107 392.1 225 87.6
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.6e-107 391.7 225 88.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 6.0e-107 391.3 225 88.0
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 6.0e-107 391.3 225 88.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 6.0e-107 391.3 225 88.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 6.0e-107 391.3 225 85.8
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 6.0e-107 391.3 225 87.1
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.8e-107 391.0 225 87.1
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 7.8e-107 391.0 225 87.1
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.0e-106 390.6 225 86.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.0e-106 390.6 225 87.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.0e-106 390.6 225 87.1
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.0e-106 390.6 225 86.7
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.7e-106 389.8 225 87.6
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.7e-106 389.8 225 86.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 3.9e-106 388.7 225 84.4
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.9e-106 388.7 225 88.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 85.8
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 88.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 88.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 88.0
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 88.0
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 5.1e-106 388.3 225 88.0
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 6.6e-106 387.9 225 85.8
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 6.6e-106 387.9 225 86.2
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 8.7e-106 387.5 225 85.8
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.7e-106 387.5 225 86.2
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.1e-105 387.1 225 85.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-105 387.1 225 84.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.1e-105 387.1 225 84.0
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.1e-105 387.1 225 87.6
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.5e-105 386.7 225 88.0
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.5e-105 386.7 222 87.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.9e-105 386.3 225 84.9
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.5e-105 386.0 225 84.9
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.5e-105 386.0 225 86.2
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.5e-105 386.0 225 85.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 3.3e-105 385.6 225 84.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.3e-105 385.6 225 84.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.1e-104 382.9 225 86.2
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.8e-104 382.5 225 85.3
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.7e-104 381.7 225 85.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 4.7e-104 381.7 225 84.0
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.7e-104 381.7 225 84.4
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 6.2e-104 381.3 225 85.8
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.2e-104 381.3 225 85.8
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.2e-104 381.3 225 85.8
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.2e-104 381.3 225 85.8
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.1e-103 380.6 225 84.0
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.8e-103 379.8 225 84.0
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 4.0e-103 378.6 225 85.8
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.2e-102 377.1 225 86.7
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.5e-102 376.7 222 85.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.7e-101 373.2 225 86.2
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.7e-101 373.2 225 82.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 4.9e-101 371.7 225 82.2
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 5.4e-100 368.2 225 83.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.1e-99 366.3 225 80.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.7e-99 365.9 225 83.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.7e-99 365.9 225 82.7
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 3.5e-99 365.5 225 83.1
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.5e-99 365.5 225 81.8
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 5.1e-98 361.7 229 78.6
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 5.1e-98 361.7 222 80.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 6.6e-98 361.3 300 66.0
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.9e-97 359.8 318 63.2
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 7.3e-97 357.8 222 80.2
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 6.2e-96 354.8 262 71.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.0e-94 349.7 225 80.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 9.3e-92 340.9 225 80.0
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 8.7e-90 334.3 228 70.2
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.4e-87 326.2 186 84.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 5.5e-84 315.1 235 69.8
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.9e-82 308.9 222 70.7
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.3e-77 293.9 225 68.4
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 7.1e-76 288.1 165 87.9
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 4.5e-62 242.3 225 62.2
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 3.8e-53 212.6 122 86.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 8.5e-53 211.5 131 82.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 4.2e-52 209.1 131 81.7
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 6.5e-45 185.3 102 92.2
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.6e-43 179.5 103 84.5
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 3.6e-43 179.5 103 84.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.5e-37 158.3 102 80.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-36 157.5 99 81.8
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 8.9e-26 121.7 102 66.7
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 4.9e-24 115.9 97 63.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.3e-21 107.1 61 88.5
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.6e-21 105.1 65 75.4
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-20 104.0 64 84.4


User provided reference genes

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