Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030099 Daucus carota HOM05D004673 ORTHO05D005596 9.5e-310 1067.0 1077 100.0
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 2.4e-111 407.9 526 66.0
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 3.9e-77 294.3 472 72.7
DCAR_030102 Daucus carota HOM05D004673 ORTHO05D005596 1.4e-66 259.2 1163 39.4
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 2.0e-65 255.4 336 61.9
DCAR_030112 Daucus carota HOM05D004673 ORTHO05D005596 9.2e-63 246.5 336 71.7
DCAR_030110 Daucus carota HOM05D004673 ORTHO05D005596 1.6e-62 245.7 491 64.0
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 9.3e-55 219.9 470 60.9
DCAR_030100 Daucus carota HOM05D004673 ORTHO05D005596 2.1e-54 218.8 337 60.8
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 3.3e-52 211.5 439 55.1
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 5.4e-47 194.1 489 64.8
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 6.0e-46 190.7 433 54.3
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 1.1e-44 186.4 434 53.0
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 6.2e-43 180.6 432 52.3
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 6.2e-43 180.6 476 67.0
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 9.0e-42 176.8 478 66.5
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 1.2e-38 166.4 443 50.3
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 2.7e-38 165.2 484 65.3
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 6.0e-38 164.1 452 48.7
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 2.3e-37 162.2 431 51.7
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 3.9e-37 161.4 478 65.5
Manes.03G086906 Manihot esculenta HOM05D004673 ORTHO05D005596 9.6e-36 156.8 461 67.0
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 3.7e-35 154.8 413 51.3
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 2.4e-34 152.1 472 62.5
Lsat_1_v5_gn_6_53540 Lactuca sativa HOM05D004673 ORTHO05D005596 5.3e-34 151.0 431 49.9
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 1.2e-33 149.8 473 64.9
DCAR_030108 Daucus carota HOM05D004673 ORTHO05D005596 4.5e-33 147.9 198 73.7
DCAR_030115 Daucus carota HOM05D004673 ORTHO05D005596 1.7e-32 146.0 196 75.0
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 1.9e-31 142.5 474 62.7
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 1.9e-31 142.5 469 58.0
DCAR_030118 Daucus carota HOM05D004673 ORTHO05D005596 4.2e-31 141.4 324 39.8
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 7.1e-31 140.6 450 65.3
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 7.1e-31 140.6 467 61.2
Actinidia00906 Actinidia chinensis HOM05D004673 ORTHO05D005596 6.0e-30 137.5 195 42.1
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 7.9e-30 137.1 481 63.8
DCAR_030119 Daucus carota HOM05D004673 ORTHO05D005596 3.3e-28 131.7 159 84.9
CAN.G1834.13 Capsicum annuum HOM05D004673 ORTHO05D005596 4.3e-28 131.3 454 64.1
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 9.6e-28 130.2 293 44.0
Sabra01G0002300 Salix brachista HOM05D004673 ORTHO05D005596 1.3e-27 129.8 308 43.5
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 1.8e-26 125.9 393 37.2
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 5.3e-26 124.4 356 62.9
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 6.9e-26 124.0 294 43.9
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 1.5e-25 122.9 491 56.6
DCAR_030125 Daucus carota HOM05D004673 ORTHO05D005596 1.5e-25 122.9 156 84.6
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 3.4e-25 121.7 457 61.7
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 3.4e-25 121.7 427 38.2
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 2.2e-24 119.0 438 45.2
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.2e-24 119.0 482 61.4
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 8.5e-24 117.1 475 57.9
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 1.4e-23 116.3 466 63.7
ECA233G4485 Erigeron canadensis HOM05D004673 ORTHO05D005596 4.2e-23 114.8 549 40.4
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 5.5e-23 114.4 478 57.5
Gorai.007G289600 Gossypium raimondii HOM05D004673 ORTHO05D005596 1.2e-22 113.2 286 43.7
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 4.6e-22 111.3 470 59.8
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.3e-21 109.8 335 42.4
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 1.8e-21 109.4 470 61.9
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 3.0e-21 108.6 408 65.7
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 1.9e-20 105.9 468 61.1
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 4.3e-20 104.8 344 56.7
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 5.7e-20 104.4 321 60.4
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 7.4e-20 104.0 247 45.7
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 4.8e-19 101.3 187 67.4
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 6.3e-19 100.9 366 53.6
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 1.1e-18 100.1 196 66.3
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 1.1e-18 100.1 475 60.2
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 1.4e-18 99.8 478 58.8
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 1.8e-18 99.4 199 63.8
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 1.2e-17 96.7 208 58.7
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 2.0e-17 95.9 435 42.5
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 3.4e-17 95.1 175 70.9
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 4.5e-17 94.7 450 42.9
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 2.2e-16 92.4 480 58.3
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 3.8e-16 91.7 202 59.9
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 3.8e-16 91.7 200 62.0
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.0e-16 91.3 204 60.8
Dinv00554 Davidia involucrata HOM05D004673 ORTHO05D005596 5.0e-16 91.3 193 62.2
Lj1P521T7 Lonicera japonica HOM05D004673 ORTHO05D005596 6.5e-16 90.9 60 71.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.9e-15 89.4 224 50.0
THA.LOC104816063 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 2.5e-15 89.0 211 60.2
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 3.2e-15 88.6 343 53.9
CsaV3_1G041620 Cucumis sativus L. HOM05D004673 ORTHO05D005596 4.2e-15 88.2 240 54.2
HanXRQChr07g0187111 Helianthus annuus HOM05D004673 ORTHO05D005596 6.1e-14 84.3 203 61.6
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 7.9e-14 84.0 177 65.0
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 2.3e-13 82.4 187 64.7
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 3.0e-13 82.0 213 56.3
QL08p055485 Quercus lobata HOM05D004673 ORTHO05D005596 3.9e-13 81.6 73 50.7
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.7e-13 80.9 153 60.8
MELO3C015573.2 Cucumis melo HOM05D004673 ORTHO05D005596 8.8e-13 80.5 243 52.3
HPP92_013960 Vanilla planifolia HOM05D004673 ORTHO05D005596 8.8e-13 80.5 306 41.8
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 1.1e-12 80.1 147 59.9
GSVIVG01025484001 Vitis vinifera HOM05D004673 ORTHO05D005596 1.1e-12 80.1 76 52.6
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 3.3e-12 78.6 250 27.2
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 4.4e-12 78.2 212 56.1
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 4.4e-12 78.2 198 58.6
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 9.7e-12 77.0 307 55.4
CARHR253290 Cardamine hirsuta HOM05D004673 ORTHO05D005596 9.7e-12 77.0 149 71.8
Lj1P522T31 Lonicera japonica HOM05D004673 ORTHO05D005596 1.3e-11 76.6 95 46.3
BcaC01g04387 Brassica carinata HOM05D004673 ORTHO05D005596 2.8e-11 75.5 181 27.6
DCAR_030126 Daucus carota HOM05D004673 ORTHO05D005596 3.7e-11 75.1 140 77.9
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 4.8e-11 74.7 234 53.0
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 4.8e-11 74.7 73 50.7
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 6.3e-11 74.3 195 57.9
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 8.2e-11 73.9 144 59.7
Aa31LG5G14510 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.4e-10 73.2 160 68.1
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 3.1e-10 72.0 280 53.6
CARHR253180 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.3e-10 71.2 170 57.1
QL01p004071 Quercus lobata HOM05D004673 ORTHO05D005596 9.1e-10 70.5 242 47.9
QL08p003638 Quercus lobata HOM05D004673 ORTHO05D005596 9.1e-10 70.5 164 69.5
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 1.5e-09 69.7 197 26.9
CARHR253370 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.0e-09 69.3 142 72.5
Eucgr.K00261 Eucalyptus grandis HOM05D000071 ORTHO05D000029 2.0e-09 69.3 66 47.0
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 3.4e-09 68.6 164 66.5
HPP92_013964 Vanilla planifolia HOM05D004673 ORTHO05D005596 3.4e-09 68.6 161 67.1
AUR62035590 Chenopodium quinoa HOM05D000071 ORTHO05D000029 5.9e-09 67.8 70 44.3
Haze_00086 Corylus avellana HOM05D000071 ORTHO05D000029 5.9e-09 67.8 327 23.9
HanXRQChr07g0187541 Helianthus annuus HOM05D004673 ORTHO05D005596 7.7e-09 67.4 67 53.7
Lsat_1_v5_gn_5_94140 Lactuca sativa HOM05D000071 ORTHO05D000029 7.7e-09 67.4 76 46.1
FAN01G1144 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.0e-08 67.0 209 29.2
ATR0697G215 Amborella trichopoda HOM05D004673 ORTHO05D005596 1.3e-08 66.6 338 53.8
COL.COLO4_13601 Corchorus olitorius HOM05D000750 ORTHO05D000714 1.3e-08 66.6 347 30.0
Dinv09265 Davidia involucrata HOM05D004673 ORTHO05D005596 1.7e-08 66.2 122 32.8
HPP92_013962 Vanilla planifolia HOM05D004673 ORTHO05D005596 2.2e-08 65.9 187 58.3
EL10Ac3g05146 Beta vulgaris HOM05D000071 ORTHO05D000029 2.9e-08 65.5 70 41.4
CSS0016244 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.9e-08 65.5 284 35.6
Lj1g0022948 Lotus japonicus HOM05D000071 ORTHO05D000029 2.9e-08 65.5 143 35.0
MBI14_g41283_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000035 2.9e-08 65.5 292 25.0
Eucgr.L01680 Eucalyptus grandis HOM05D000071 ORTHO05D000029 3.8e-08 65.1 68 42.6
SGA_v2.0_scaffold89G27396 Striga asiatica HOM05D000071 ORTHO05D000029 5.0e-08 64.7 283 34.6
Migut.M00450 Erythranthe guttata HOM05D000071 ORTHO05D000029 8.5e-08 63.9 281 23.8
Cfa000855 Carpinus fangiana HOM05D000071 ORTHO05D000029 1.1e-07 63.5 303 24.1
AUR62006036 Chenopodium quinoa HOM05D000071 ORTHO05D000029 1.1e-07 63.5 70 42.9
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.1e-07 63.5 291 25.4
DCAR_030116 Daucus carota HOM05D004673 ORTHO05D005596 1.4e-07 63.2 168 72.0
MBI11_g31285_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 1.4e-07 63.2 69 47.8
TPR.G10147 Trifolium pratense HOM05D000071 ORTHO05D000029 1.4e-07 63.2 76 44.7
Lj1g0009087 Lotus japonicus HOM05D000071 ORTHO05D000029 1.9e-07 62.8 143 35.0
Lj1g0015052 Lotus japonicus HOM05D000071 ORTHO05D000029 1.9e-07 62.8 143 35.0
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 1.9e-07 62.8 223 39.0
MSTRG.6519 Avicennia marina HOM05D000071 ORTHO05D000029 2.5e-07 62.4 338 24.9
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 3.2e-07 62.0 190 57.9
PGR042G3899 Punica granatum HOM05D000071 ORTHO05D000029 3.2e-07 62.0 62 40.3
Rhsim03G0025800 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.2e-07 62.0 62 40.3
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 3.2e-07 62.0 59 45.8
CARHR253240 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.2e-07 61.6 61 49.2
Eucgr.A00621 Eucalyptus grandis HOM05D000071 ORTHO05D000029 4.2e-07 61.6 63 42.9
Lsat_1_v5_gn_5_94020 Lactuca sativa HOM05D000071 ORTHO05D000029 4.2e-07 61.6 59 49.2
Prupe.1G067000 Prunus persica HOM05D000071 ORTHO05D000029 5.5e-07 61.2 439 19.8
Rhsim03G0182600 Rhododendron simsii HOM05D000071 ORTHO05D000029 5.5e-07 61.2 64 43.8
Rhsim03G0183000 Rhododendron simsii HOM05D000071 ORTHO05D000029 5.5e-07 61.2 62 41.9
MSTRG.8890 Avicennia marina HOM05D000071 ORTHO05D000029 7.2e-07 60.8 75 40.0
CANSAT11G2454 Cannabis sativa HOM05D000071 ORTHO05D000029 7.2e-07 60.8 210 26.7
Eucgr.A00622 Eucalyptus grandis HOM05D000071 ORTHO05D000029 7.2e-07 60.8 63 44.4
Medtr5g085970 Medicago truncatula HOM05D000071 ORTHO05D000029 7.2e-07 60.8 136 29.4
CARHR253200 Cardamine hirsuta HOM05D004673 ORTHO05D005596 9.4e-07 60.5 51 56.9
Haze_06467 Corylus avellana HOM05D000071 ORTHO05D000029 9.4e-07 60.5 69 40.6
Hma1.2p1_0270F.1_g107980 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 9.4e-07 60.5 60 40.0
GSVIVG01025477001 Vitis vinifera HOM05D004673 ORTHO05D005596 9.4e-07 60.5 47 59.6
Eucgr.A00728 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.2e-06 60.1 75 40.0
Lj2g0024572 Lotus japonicus HOM05D000071 ORTHO05D000029 1.2e-06 60.1 120 35.8
vmacro06677 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 1.2e-06 60.1 62 41.9
Eucgr.K00259 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.6e-06 59.7 63 44.4
Hma1.2p1_0685F.1_g203100 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.1e-06 59.3 286 25.2
Lsat_1_v5_gn_3_93840 Lactuca sativa HOM05D000071 ORTHO05D000029 2.1e-06 59.3 59 44.1
Lj2P776T43 Lonicera japonica HOM05D004673 ORTHO05D005596 2.1e-06 59.3 42 64.3
Rhsim03G0185100 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.1e-06 59.3 64 42.2
Manes.10G026700 Manihot esculenta HOM05D000053 ORTHO05D000035 2.7e-06 58.9 288 36.1
QL02p063175 Quercus lobata HOM05D000071 ORTHO05D000029 2.7e-06 58.9 77 39.0
Sabra01G0002200 Salix brachista HOM05D004673 ORTHO05D005596 2.7e-06 58.9 43 65.1
SEGI_35217 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 2.7e-06 58.9 72 36.1
Haze_24812 Corylus avellana HOM05D000071 ORTHO05D000029 3.6e-06 58.5 277 23.8
Eucgr.A00620 Eucalyptus grandis HOM05D000071 ORTHO05D000029 3.6e-06 58.5 74 39.2
ECA233G1938 Erigeron canadensis HOM05D000071 ORTHO05D000029 4.7e-06 58.2 64 45.3
Oeu026370.1 Olea europaea HOM05D000053 ORTHO05D000035 4.7e-06 58.2 139 30.9
SEGI_37256 Sequoiadendron giganteum HOM05D000071 ORTHO05D001565 4.7e-06 58.2 202 26.2
TWI09G1120 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 4.7e-06 58.2 71 38.0
Ca_10691_v3 Cicer arietinum L. HOM05D000071 ORTHO05D000029 6.1e-06 57.8 75 42.7
Haze_21507 Corylus avellana HOM05D000071 ORTHO05D000029 6.1e-06 57.8 76 39.5
Rhsim03G0181200 Rhododendron simsii HOM05D000683 ORTHO05D000507 6.1e-06 57.8 60 43.3
Rhsim03G0181300 Rhododendron simsii HOM05D000071 ORTHO05D000029 6.1e-06 57.8 60 43.3
SEGI_12875 Sequoiadendron giganteum HOM05D010421 ORTHO05D000029 6.1e-06 57.8 62 43.5
BcaB01g00056 Brassica carinata HOM05D000053 ORTHO05D000035 7.9e-06 57.4 339 22.4


User provided reference genes

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