Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 9.9e-203 709.9 363 100.0
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 8.5e-154 547.4 362 77.9
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.7e-149 533.1 329 80.2
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.1e-148 530.4 360 77.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.0e-147 526.2 363 75.8
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.5e-147 525.0 362 74.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.0e-146 523.9 349 75.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.7e-146 523.1 363 74.9
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.7e-146 523.1 349 75.9
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.7e-146 523.1 349 75.9
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.7e-146 523.1 349 75.9
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.3e-146 522.7 362 77.1
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.9e-146 522.3 349 76.5
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.1e-145 520.4 367 74.4
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.9e-145 519.6 355 75.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 3.3e-145 518.8 340 78.8
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.3e-145 518.8 346 76.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 3.6e-144 515.4 332 79.5
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 6.1e-144 514.6 352 76.4
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.4e-143 513.5 342 76.3
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.4e-143 513.5 358 75.1
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.4e-143 513.5 363 74.1
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 3.0e-143 512.3 365 73.4
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 4.0e-143 511.9 364 72.3
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 6.8e-143 511.1 363 73.8
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 8.9e-143 510.8 358 74.0
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.2e-142 510.4 361 74.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.0e-142 509.6 362 74.3
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 7.5e-142 507.7 367 71.9
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 7.5e-142 507.7 365 72.1
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 7.5e-142 507.7 358 74.9
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.7e-141 506.5 367 71.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.7e-141 506.5 363 73.8
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.2e-141 506.1 356 74.2
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.2e-141 506.1 350 74.3
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 2.8e-141 505.8 358 74.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.8e-141 505.8 350 75.7
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.8e-141 505.8 318 79.2
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.8e-141 505.8 359 72.1
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.8e-141 505.8 349 74.2
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 3.7e-141 505.4 366 73.8
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.7e-141 505.4 365 72.6
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.7e-141 505.4 358 74.3
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.3e-141 504.2 372 72.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.4e-140 503.4 334 78.1
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.4e-140 503.4 356 74.2
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.4e-140 503.4 366 73.2
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 3.1e-140 502.3 327 77.1
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 4.1e-140 501.9 350 74.9
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 4.1e-140 501.9 359 72.7
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.4e-140 501.5 358 74.0
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 7.0e-140 501.1 351 75.5
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.2e-139 500.4 364 72.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.0e-139 499.6 322 78.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 3.5e-139 498.8 365 73.2
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.0e-138 497.3 362 72.9
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.3e-138 496.9 369 73.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.8e-138 495.4 365 71.8
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 6.6e-138 494.6 340 74.7
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.1e-137 493.8 362 72.1
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 3.3e-137 492.3 360 71.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-137 492.3 384 69.3
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.6e-137 491.5 384 69.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 5.6e-137 491.5 361 70.9
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 5.6e-137 491.5 339 72.6
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.6e-136 490.0 367 72.2
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 2.1e-136 489.6 330 75.5
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 2.1e-136 489.6 329 76.9
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.8e-136 489.2 382 70.2
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 6.1e-136 488.0 348 72.7
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 6.1e-136 488.0 358 71.8
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.4e-135 486.9 308 78.2
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.3e-135 486.1 348 69.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.0e-135 485.7 362 72.4
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 6.8e-135 484.6 358 70.9
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 6.8e-135 484.6 360 69.7
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.2e-134 483.8 352 72.4
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 3.4e-134 482.3 365 68.2
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 5.8e-134 481.5 352 72.2
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 9.8e-134 480.7 332 75.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 9.8e-134 480.7 343 69.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.7e-133 479.9 364 70.9
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 2.9e-133 479.2 367 68.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.4e-132 476.1 284 84.5
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.6e-131 473.4 364 70.1
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 2.0e-131 473.0 361 67.6
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 2.0e-131 473.0 358 68.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 4.6e-131 471.9 352 69.9
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 4.6e-131 471.9 464 59.9
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.0e-130 468.4 337 70.6
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.3e-129 465.7 298 77.9
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 2.8e-128 462.6 360 67.5
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.0e-128 461.1 358 65.6
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.4e-127 460.3 364 67.9
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.8e-127 459.9 322 71.7
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.0e-126 456.4 359 64.9
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.8e-126 454.9 309 74.1
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.5e-126 454.5 345 69.6
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.7e-125 452.2 362 64.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 3.7e-125 452.2 338 70.1
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.2e-124 449.1 327 71.3
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.1e-123 446.4 360 66.7
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-121 440.7 360 65.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-121 440.7 360 65.8
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-121 440.7 348 67.5
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.9e-121 439.9 330 69.7
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 3.3e-121 439.1 341 65.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.3e-121 439.1 360 65.3
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 4.3e-121 438.7 342 66.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-120 437.2 360 64.7
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 8.1e-120 434.5 361 65.1
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.1e-119 434.1 359 61.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.1e-119 434.1 341 65.7
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.4e-119 433.7 341 64.8
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.8e-119 433.3 360 64.4
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.5e-118 430.3 357 63.9
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.4e-118 429.1 360 63.1
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 4.4e-118 428.7 359 63.2
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 4.4e-118 428.7 359 63.2
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 9.9e-118 427.6 350 67.1
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.7e-117 426.8 340 64.4
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 4.9e-117 425.2 359 62.4
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.1e-116 424.1 336 64.3
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.4e-116 423.7 357 60.8
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.2e-116 422.5 362 62.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 3.2e-116 422.5 359 62.7
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 9.2e-116 421.0 331 66.5
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 6.6e-114 414.8 365 59.5
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.6e-112 410.2 366 62.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.1e-112 409.8 282 73.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.4e-108 397.1 360 56.1
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 6.0e-107 391.7 345 59.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.1e-103 380.9 468 49.8
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-102 377.5 359 58.2
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.8e-101 372.5 275 67.3
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-98 364.4 277 71.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 2.3e-98 363.2 321 61.7
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 9.9e-94 347.8 264 66.3
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 3.0e-90 336.3 329 52.9
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.8e-88 329.7 328 53.7
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.4e-87 327.4 223 74.4
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 8.4e-85 318.2 319 53.9
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.2e-84 315.8 294 54.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 2.7e-83 313.2 223 73.5
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.3e-82 310.1 358 49.4
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 2.5e-81 306.6 204 75.5
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 5.3e-79 298.9 221 69.7
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.0e-77 294.7 223 68.2
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 2.2e-77 293.5 208 72.6
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 3.2e-76 289.7 219 68.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.3e-74 284.3 281 56.9
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.8e-66 257.3 280 47.5
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.5e-52 210.3 165 66.7
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.4e-49 199.5 137 74.5
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 7.0e-47 192.2 140 72.9
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 5.0e-45 186.0 129 72.1
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.4e-42 177.9 155 58.7
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 4.7e-35 152.9 89 80.9
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.3e-34 150.6 108 70.4
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 6.1e-27 125.9 273 32.2
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.2e-25 121.7 92 62.0
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.2e-19 101.7 305 26.9
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 2.1e-06 57.8 38 78.9


User provided reference genes

Program Settings