Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.2e-186 656.4 340 100.0
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.0e-157 559.3 342 86.3
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.7e-148 529.6 336 78.9
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.5e-147 526.6 338 79.6
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 7.2e-147 524.2 333 79.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.4e-144 515.0 304 85.2
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 5.7e-144 514.6 338 78.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.2e-143 512.7 333 78.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.3e-143 510.8 313 83.1
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.7e-140 503.1 342 74.9
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.7e-140 503.1 310 80.3
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.9e-140 502.3 293 85.0
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.9e-140 501.9 304 81.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.9e-139 499.6 303 83.5
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-139 499.2 304 81.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-139 499.2 304 81.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.5e-139 499.2 304 81.2
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.5e-139 499.2 304 81.2
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 4.3e-139 498.4 304 82.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.6e-138 496.5 332 77.1
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 3.6e-138 495.4 336 75.9
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 8.0e-138 494.2 339 74.6
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-137 493.4 321 76.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.3e-137 492.7 300 81.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-137 492.7 306 80.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-137 492.7 306 79.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.1e-137 492.3 330 76.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 4.0e-137 491.9 334 76.6
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 4.0e-137 491.9 341 73.3
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 8.9e-137 490.7 300 81.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-136 490.3 335 74.6
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.5e-136 490.0 334 75.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.5e-136 490.0 337 76.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.5e-136 490.0 330 78.2
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.5e-136 490.0 333 74.8
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.0e-136 489.6 332 76.2
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 9.8e-136 487.3 287 84.3
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 9.8e-136 487.3 333 74.5
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 9.8e-136 487.3 337 75.7
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 9.8e-136 487.3 334 75.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 9.8e-136 487.3 333 73.9
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.3e-135 486.9 306 78.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-135 486.9 306 79.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.2e-135 486.1 336 75.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.2e-135 486.1 333 75.1
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.9e-135 485.7 334 75.4
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.7e-135 485.3 303 80.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-135 485.3 360 70.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 4.9e-135 485.0 289 82.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.4e-134 483.4 329 75.1
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-134 483.0 330 73.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.4e-134 482.6 313 77.3
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.2e-134 482.3 331 74.6
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 3.2e-134 482.3 324 76.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-134 482.3 334 73.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.1e-134 481.9 329 74.8
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 9.2e-134 480.7 339 74.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-133 480.3 330 73.9
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-133 480.3 330 73.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.0e-133 479.6 334 74.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.7e-133 479.2 333 73.6
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.0e-132 477.2 311 75.9
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.7e-132 476.5 306 75.5
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.7e-132 476.5 292 79.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.9e-131 473.0 327 77.1
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.5e-131 472.6 330 71.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.3e-131 472.2 336 72.9
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.6e-131 471.5 334 74.0
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.3e-131 471.1 333 73.3
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 8.0e-130 467.6 333 73.0
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.0e-130 467.6 342 70.5
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.8e-129 466.5 333 70.9
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.3e-129 466.1 333 72.4
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 3.1e-129 465.7 333 72.1
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 3.1e-129 465.7 333 72.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 5.2e-129 464.9 305 76.1
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.2e-129 464.9 335 72.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.2e-129 464.9 326 70.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.9e-129 464.2 328 72.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 8.9e-129 464.2 296 77.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-128 463.8 333 72.1
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.2e-128 463.8 335 72.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.0e-128 463.0 336 71.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-128 463.0 336 71.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.0e-128 463.0 336 71.7
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 2.6e-128 462.6 335 71.9
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 3.4e-128 462.2 333 72.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 3.4e-128 462.2 333 72.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 3.4e-128 462.2 333 72.4
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.4e-128 461.8 333 71.8
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.8e-128 461.5 327 72.5
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.5e-128 461.1 279 80.3
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.9e-127 459.1 333 71.8
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.9e-127 459.1 325 73.5
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.7e-127 458.8 328 71.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 6.4e-127 458.0 298 75.5
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-126 457.2 306 75.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 4.1e-126 455.3 297 79.8
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.1e-125 453.0 293 75.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.5e-123 446.8 296 76.7
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 4.7e-122 441.8 294 73.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 7.6e-120 434.5 383 64.0
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-119 433.3 333 68.5
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.2e-119 433.0 339 65.2
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.9e-119 432.6 327 69.4
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.9e-118 429.9 359 64.9
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 4.1e-118 428.7 281 74.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 7.1e-118 427.9 346 67.6
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 9.2e-118 427.6 293 72.4
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.1e-117 426.4 302 73.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.5e-117 425.6 333 66.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-116 423.3 360 63.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-116 422.2 294 72.8
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.5e-115 419.5 349 66.5
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.8e-114 416.0 318 68.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.6e-112 409.5 323 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.9e-111 406.0 307 65.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-110 403.7 248 81.0
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 3.5e-109 399.1 237 81.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.6e-106 390.2 297 67.3
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 3.6e-106 389.0 331 60.7
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.2e-103 379.8 230 82.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 9.3e-102 374.4 218 86.2
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.3e-100 369.8 240 75.0
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.6e-99 365.2 333 60.1
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.6e-99 365.2 333 60.1
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.1e-98 363.2 279 68.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 9.9e-96 354.4 333 59.8
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 8.4e-95 351.3 294 61.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.2e-94 349.0 331 59.5
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.5e-91 340.5 228 73.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.4e-89 333.2 223 73.5
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.1e-86 324.3 220 72.3
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.0e-79 298.9 213 75.1
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.8e-74 282.3 333 51.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.4e-73 280.0 197 72.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.5e-63 245.4 248 56.5
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-62 244.2 169 68.0
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.9e-62 243.8 163 80.4
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.7e-50 203.0 153 68.6
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.6e-37 161.0 125 64.8
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.9e-32 142.5 88 75.0
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-30 138.3 104 67.3
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 4.3e-30 136.3 117 65.8
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.2e-30 135.6 104 66.3
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-26 124.8 131 50.4
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-26 124.0 95 65.3
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.4e-25 120.6 301 27.6
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 5.9e-24 115.9 104 65.4
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.7e-23 114.4 104 64.4
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.3e-22 110.2 89 65.2
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.4e-19 100.1 89 55.1
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.7e-18 97.8 73 67.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-18 97.8 72 68.1
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.9e-18 96.3 79 68.4
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.2e-17 92.0 56 67.9
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.6e-15 85.9 72 58.3
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.3e-14 83.2 52 73.1
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-12 77.4 73 60.3


User provided reference genes

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