Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 0.0e+00 1699.1 814 100.0
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1112.8 917 59.1
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1102.0 920 58.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1091.6 913 58.6
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 2.2e-311 1072.0 904 56.6
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.8e-311 1071.6 917 56.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 5.0e-311 1070.8 915 57.7
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 1.9e-310 1068.9 948 55.8
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.1e-309 1065.4 920 56.6
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 4.4e-307 1057.7 913 56.7
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 1.7e-306 1055.8 915 56.0
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 1.2e-304 1049.7 918 55.1
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 2.0e-304 1048.9 918 57.2
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 1.5e-302 1042.7 893 55.8
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 1.6e-301 1039.3 922 54.8
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.6e-301 1038.1 825 60.0
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.0e-299 1032.3 913 54.4
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 9.7e-299 1030.0 913 54.3
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 1.3e-298 1029.6 913 54.3
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 7.7e-296 1020.4 906 54.5
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 5.0e-295 1017.7 904 55.2
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 8.5e-295 1016.9 910 54.7
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 8.5e-295 1016.9 912 54.4
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 5.5e-294 1014.2 931 53.1
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 5.5e-294 1014.2 897 55.0
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 1.2e-293 1013.1 915 54.8
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 1.2e-293 1013.1 898 54.7
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.6e-293 1011.5 904 54.6
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 3.6e-293 1011.5 911 54.3
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 2.0e-291 1005.7 843 57.7
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 6.3e-290 1000.7 912 53.7
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 1.1e-289 1000.0 904 54.4
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 1.1e-289 1000.0 826 59.2
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 2.0e-288 995.7 909 52.6
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 2.0e-288 995.7 879 55.2
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 4.2e-286 988.0 894 54.3
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 7.2e-286 987.3 892 54.6
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 9.8e-283 976.9 898 54.1
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 1.1e-281 973.4 901 53.3
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.4e-281 972.2 789 58.4
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 2.4e-281 972.2 876 55.9
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 3.5e-280 968.4 885 53.4
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.6e-279 964.1 904 53.0
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.2e-277 959.9 907 53.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.2e-277 959.9 869 54.3
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 4.0e-276 954.9 902 53.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.7e-274 949.5 909 51.5
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 6.4e-274 947.6 888 51.7
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 8.3e-274 947.2 911 53.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 7.0e-273 944.1 818 54.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 1.6e-272 943.0 910 51.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 5.9e-272 941.0 897 51.4
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 6.6e-271 937.6 913 51.7
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.5e-270 936.4 909 50.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 3.3e-270 935.3 817 54.7
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 5.6e-270 934.5 889 51.2
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 9.5e-270 933.7 905 52.3
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 3.6e-269 931.8 891 51.0
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 6.2e-269 931.0 891 51.7
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 1.4e-268 929.9 881 54.3
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 3.4e-267 925.2 917 50.2
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.9e-266 922.2 789 55.8
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 9.2e-265 917.1 906 51.5
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.6e-264 916.4 801 55.4
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 4.3e-262 908.3 893 49.8
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-261 906.7 879 50.7
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 4.7e-261 904.8 837 55.2
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 1.1e-260 903.7 908 49.9
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 4.0e-260 901.7 888 50.2
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.7e-258 896.3 888 50.2
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 3.5e-256 888.6 904 49.6
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.9e-254 882.9 902 48.9
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 1.9e-254 882.9 878 50.1
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.5e-254 882.5 902 48.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 2.2e-250 869.4 715 58.0
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.7e-248 862.4 808 50.9
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.7e-248 862.4 808 50.9
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.6e-240 836.6 873 47.9
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 1.3e-239 833.6 946 46.7
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.9e-238 829.7 939 45.5
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 8.1e-237 824.3 824 50.7
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.1e-233 813.9 713 55.0
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 9.3e-225 784.3 835 48.3
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.3e-223 779.6 747 51.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 3.4e-219 765.8 723 50.8
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 4.1e-204 715.7 639 55.2
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 4.5e-203 712.2 816 45.7
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.6e-200 703.7 616 56.5
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.2e-187 661.0 855 44.3
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 6.3e-181 638.6 461 65.1
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.2e-176 624.4 973 35.9
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.9e-170 603.2 642 46.4
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.3e-157 558.5 440 60.0
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 7.8e-155 552.0 573 48.7
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 4.9e-149 532.7 478 55.0
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 3.1e-127 460.3 534 44.9
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.1e-119 433.7 497 45.3
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.7e-109 401.4 1004 28.9
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.7e-106 389.4 434 46.3
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.3e-101 375.2 322 55.6
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.2e-101 374.4 305 56.4
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 9.3e-92 342.4 377 46.7
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.6e-73 281.2 256 53.1
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.7e-67 261.2 204 60.8
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 9.1e-63 246.1 244 52.5
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 4.5e-62 243.8 262 45.0
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.0e-58 232.6 250 46.0
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 4.0e-58 230.7 222 51.8
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 5.2e-50 203.8 231 46.8
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 7.0e-39 166.8 155 51.0
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 3.5e-38 164.5 155 52.3
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 1.1e-34 152.9 119 57.1
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 1.2e-30 139.4 905 22.2
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 3.9e-29 134.4 104 61.5
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.1e-29 134.0 216 35.6
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 4.3e-28 131.0 93 61.3
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 1.2e-17 96.3 87 48.3
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.2e-15 88.2 99 42.4
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 3.6e-11 74.7 61 52.5
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.6e-11 74.7 62 51.6
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 5.3e-10 70.9 58 51.7
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 1.2e-09 69.7 42 73.8
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.5e-09 69.3 82 50.0
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.4e-07 62.0 52 48.1


User provided reference genes

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