Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.7e-47 191.8 106 100.0
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 4.4e-26 121.3 112 66.1
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.7e-25 118.2 112 65.2
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 7.0e-24 114.0 113 65.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 2.0e-23 112.5 108 62.0
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 8.6e-22 107.1 103 63.1
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.5e-21 106.3 111 58.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 3.6e-20 101.7 109 58.7
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.7e-20 101.3 105 58.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.2e-20 100.9 110 57.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.2e-20 100.9 110 57.3
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 6.2e-20 100.9 105 53.3
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 8.1e-20 100.5 108 55.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.3e-19 99.0 113 51.3
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.1e-19 98.6 111 53.2
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-19 98.6 110 56.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 5.2e-19 97.8 110 54.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 6.8e-19 97.4 108 53.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 8.9e-19 97.1 111 58.6
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.2e-18 96.7 104 51.0
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.2e-18 96.7 106 57.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 57.8
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.5e-18 96.3 111 52.3
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.4e-18 95.1 108 55.6
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 3.4e-18 95.1 108 56.5
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 56.1
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 4.4e-18 94.7 107 56.1
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.8e-18 94.4 107 56.1
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 7.5e-18 94.0 113 59.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 7.5e-18 94.0 109 54.1
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.7e-17 92.8 107 57.0
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.7e-17 92.8 107 53.3
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.7e-17 92.8 110 53.6
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.9e-17 92.0 106 53.8
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.7e-17 91.7 104 55.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.9e-17 91.3 106 53.8
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 6.4e-17 90.9 106 55.7
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.4e-17 90.9 107 54.2
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 8.3e-17 90.5 110 51.8
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.3e-17 90.5 104 54.8
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 8.3e-17 90.5 110 50.9
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 110 53.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.4e-16 89.7 106 53.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.9e-16 89.4 107 56.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 107 54.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.4e-16 89.0 104 54.8
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.4e-16 89.0 110 52.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 54.6
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.2e-16 88.6 111 52.3
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.1e-16 88.2 107 52.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.1e-16 88.2 108 52.8
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.1e-16 88.2 108 52.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.1e-16 88.2 109 55.0
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 7.1e-16 87.4 109 55.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 9.2e-16 87.0 108 54.6
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 9.2e-16 87.0 112 50.9
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 9.2e-16 87.0 107 50.5
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-15 86.7 107 50.5
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.2e-15 86.7 107 48.6
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.6e-15 86.3 107 54.2
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.6e-15 86.3 106 52.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.6e-15 86.3 110 53.6
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.1e-15 85.9 113 51.3
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.1e-15 85.9 112 53.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 54.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 54.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 54.6
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-15 85.9 107 51.4
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 51.9
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.7e-15 85.5 112 48.2
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 3.5e-15 85.1 111 54.1
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 3.5e-15 85.1 107 52.3
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.6e-15 84.7 108 52.8
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.0e-15 84.3 106 50.9
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.0e-15 84.3 112 48.2
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.0e-15 84.3 115 49.6
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.8e-15 84.0 106 51.9
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.8e-15 84.0 109 51.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-14 83.6 108 50.9
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-14 83.2 108 52.8
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.3e-14 83.2 106 51.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.3e-14 83.2 115 47.8
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-14 82.4 109 55.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.3e-14 82.4 98 55.1
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.0e-14 82.0 109 51.4
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.0e-14 82.0 107 51.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.9e-14 81.6 111 51.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.9e-14 81.6 109 50.5
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.9e-14 81.6 112 50.0
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.9e-14 81.6 106 52.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.1e-14 81.3 108 51.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 6.6e-14 80.9 115 50.4
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 51.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 51.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 51.4
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 46.7
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.1e-13 80.1 104 53.8
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.1e-13 80.1 112 51.8
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.5e-13 79.7 109 49.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.9e-13 79.3 108 49.1
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.9e-13 79.3 104 48.1
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 51.4
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.3e-13 78.6 114 48.2
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 3.3e-13 78.6 108 48.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.3e-13 78.6 110 46.4
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 3.3e-13 78.6 119 49.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 7.3e-13 77.4 110 51.8
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 7.3e-13 77.4 108 46.3
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 9.5e-13 77.0 111 45.9
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.5e-13 77.0 111 45.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.2e-12 76.6 111 45.9
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 51.4
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 51.4
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.8e-12 75.5 106 45.3
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.7e-12 74.7 101 50.5
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.7e-12 74.7 110 48.2
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 8.1e-12 73.9 111 50.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 49.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.4e-11 73.2 94 50.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.2e-11 71.2 64 60.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 6.8e-11 70.9 111 45.9
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 8.9e-11 70.5 107 45.8
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 8.9e-11 70.5 108 42.6
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.5e-10 69.7 111 45.9
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 2.6e-10 68.9 38 86.8
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.6e-10 68.9 115 44.3
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 3.4e-10 68.6 94 53.2
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.4e-10 68.2 114 45.6
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-09 66.2 107 43.0
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 42.2
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-09 65.9 111 48.6
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 65 58.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.8e-09 65.1 112 43.8
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 4.9e-09 64.7 40 80.0
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 6.4e-09 64.3 109 42.2
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.4e-09 64.3 112 45.5
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 8.4e-09 63.9 119 39.5
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.9e-08 62.8 40 72.5
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 111 44.1
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.2e-08 62.0 39 82.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.1e-08 61.6 113 41.6
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 9.2e-08 60.5 116 41.4
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.2e-07 60.1 105 38.1
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 112 42.0
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-07 59.3 107 42.1
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 2.1e-07 59.3 98 40.8
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.5e-07 58.5 95 44.2
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.0e-07 57.8 118 40.7
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 7.8e-07 57.4 124 38.7
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.3e-06 56.6 106 41.5
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.3e-06 56.6 106 42.5
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.3e-06 56.6 118 39.8
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.3e-06 55.8 87 42.5
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 3.0e-06 55.5 93 41.9
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 3.9e-06 55.1 110 37.3
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.1e-06 54.7 114 41.2
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 5.1e-06 54.7 107 39.3
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 111 40.5


User provided reference genes

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