Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 0.0e+00 1264.6 663 100.0
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.6e-259 899.4 656 72.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 9.2e-255 883.6 651 71.7
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 9.5e-252 873.6 664 69.6
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-250 869.4 660 69.7
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.6e-249 865.5 655 68.5
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 9.2e-247 857.1 659 69.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-241 840.1 663 66.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 9.5e-236 820.5 660 65.3
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.0e-233 812.8 659 66.8
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.9e-231 806.2 664 62.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 7.1e-231 804.3 660 63.2
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 3.5e-230 802.0 652 64.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 7.8e-230 800.8 676 63.8
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 8.6e-229 797.3 650 64.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.9e-228 796.2 648 63.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.9e-228 796.2 665 62.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.5e-228 795.8 669 63.7
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.6e-227 793.1 626 66.5
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.8e-227 792.3 661 65.1
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.1e-226 790.4 657 62.3
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 8.9e-226 787.3 659 62.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.5e-225 786.6 659 62.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 7.6e-225 784.3 665 62.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.3e-224 783.5 658 63.5
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.3e-224 783.5 669 64.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.2e-224 782.7 663 62.4
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.9e-224 782.3 670 63.7
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.9e-223 779.6 642 63.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 4.2e-223 778.5 669 62.8
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 7.1e-223 777.7 649 62.1
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.1e-222 776.2 646 61.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.1e-222 776.2 662 62.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-222 775.4 651 62.1
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.0e-221 773.9 642 62.5
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-221 773.5 651 61.9
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 6.6e-221 771.2 657 62.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.9e-220 769.6 667 62.1
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 5.6e-220 768.1 646 61.1
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 9.6e-220 767.3 672 62.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.6e-219 766.5 651 61.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.1e-219 766.1 687 59.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.6e-219 765.4 674 61.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 8.1e-219 764.2 656 61.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.1e-218 763.8 652 62.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.1e-218 762.3 656 61.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.1e-218 762.3 667 62.5
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 4.0e-218 761.9 642 62.8
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.2e-217 760.4 687 59.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.5e-217 760.0 655 61.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 9.9e-217 757.3 651 60.5
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.7e-216 756.5 642 61.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.9e-216 755.0 642 61.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-215 753.1 660 60.8
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-215 752.3 642 61.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 3.2e-215 752.3 643 62.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.2e-215 751.9 660 60.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.7e-214 749.2 636 62.1
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.5e-214 748.8 653 60.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.3e-213 746.1 665 59.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.3e-213 746.1 710 58.6
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.7e-213 744.6 631 62.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.9e-212 743.0 632 61.9
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.1e-211 739.6 678 60.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 6.4e-208 728.0 658 58.8
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-207 727.2 631 61.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-207 726.9 661 58.5
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-207 726.1 661 58.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.2e-207 725.7 656 59.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.6e-206 723.4 652 57.7
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 6.0e-206 721.5 673 55.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.0e-205 720.7 659 58.7
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.0e-205 720.7 649 58.4
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.0e-205 720.7 665 56.8
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-205 719.5 581 62.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 7.4e-204 714.5 625 61.8
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 9.6e-204 714.1 649 58.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.1e-203 713.0 655 59.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.4e-201 705.7 646 57.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.7e-200 703.4 649 57.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-200 703.4 646 57.3
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.2e-199 699.1 646 56.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.2e-199 699.1 669 56.1
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.2e-198 697.2 656 57.0
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 3.5e-198 695.7 646 56.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.0e-198 694.9 642 56.5
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 7.9e-198 694.5 647 56.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.3e-197 693.0 582 65.1
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.0e-197 692.6 640 57.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.9e-197 692.2 576 63.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.9e-196 689.9 648 56.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.9e-196 689.9 648 56.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-196 689.9 686 56.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 8.2e-195 684.5 545 64.2
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 7.6e-193 677.9 638 56.1
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.2e-192 676.4 658 56.7
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.0e-192 675.2 640 55.8
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.5e-192 674.9 556 62.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.4e-191 673.7 657 58.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.5e-191 671.8 659 56.8
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.7e-181 638.3 564 62.8
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.4e-180 635.6 603 58.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 8.2e-179 631.3 511 65.0
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 7.9e-174 614.8 648 53.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.3e-172 609.4 537 58.8
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.2e-168 596.7 534 58.2
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.4e-165 587.4 648 50.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 8.8e-165 584.7 664 50.5
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 7.5e-164 581.6 662 48.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.2e-156 557.8 655 47.5
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.7e-144 517.3 658 44.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.7e-142 509.2 398 69.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.8e-141 505.4 399 63.7
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.2e-138 496.5 623 47.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.1e-135 488.0 661 44.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.8e-133 480.7 654 43.1
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.2e-130 469.9 654 42.4
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 7.0e-130 468.8 646 41.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 9.2e-130 468.4 429 56.2
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.0e-120 436.8 402 55.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.4e-91 339.3 244 70.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.7e-86 323.6 249 68.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.8e-77 294.7 385 45.5
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.4e-77 294.3 428 41.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.8e-69 268.1 437 40.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.2e-67 261.2 234 54.7
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.2e-66 257.3 217 67.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-58 230.7 404 38.9
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 4.8e-54 216.9 199 61.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.5e-52 210.3 385 39.0
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.2e-48 196.8 251 44.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-46 191.8 210 52.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.7e-44 183.0 236 49.6
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-43 181.0 327 38.2
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.8e-43 180.6 290 40.0
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-39 166.4 133 63.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 3.7e-38 164.1 167 53.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 5.0e-35 153.7 257 38.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-30 138.7 186 46.8
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.9e-30 137.1 108 64.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 5.9e-28 130.2 97 62.9
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.0e-27 129.4 120 65.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.5e-26 124.8 620 24.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.1e-24 117.9 96 61.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.0e-19 100.5 134 46.3
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-18 99.4 132 44.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-18 99.0 132 46.2
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.5e-18 99.0 75 66.7
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.0e-17 93.2 115 48.7
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-16 92.0 80 58.8
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.6e-15 88.2 80 56.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-14 84.7 71 54.9
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.4e-13 80.5 66 62.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.4e-13 80.5 86 52.3
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.0e-11 74.7 64 57.8
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-09 68.2 64 51.6
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 2.8e-09 68.2 52 61.5
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 3.6e-09 67.8 581 20.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 3.6e-09 67.8 109 43.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 8.1e-09 66.6 67 53.7
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-07 62.0 69 43.5
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-07 61.6 54 53.7
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 9.9e-07 59.7 53 64.2
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-06 58.2 50 56.0
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.9e-06 57.4 76 42.1


User provided reference genes

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