Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.3e-179 632.9 317 100.0
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.0e-115 418.7 293 68.6
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 5.2e-115 418.3 294 69.4
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.9e-115 417.5 296 66.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.4e-114 415.6 314 64.3
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 7.5e-114 414.5 315 66.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.7e-113 413.3 294 68.4
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-113 413.3 316 63.3
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-113 413.3 316 63.6
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.2e-113 412.9 300 66.7
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.9e-113 412.5 294 68.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 4.9e-113 411.8 294 68.4
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 4.9e-113 411.8 315 63.5
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.4e-112 410.2 294 67.0
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.9e-112 409.8 294 66.7
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 2.4e-112 409.5 295 67.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 2.4e-112 409.5 301 64.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.2e-112 409.1 294 67.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.2e-112 409.1 295 66.1
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.6e-111 406.8 299 66.9
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.1e-111 406.4 299 65.2
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.1e-111 406.4 304 64.8
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.1e-111 406.4 294 66.7
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.1e-111 406.4 294 66.7
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.1e-111 406.4 295 66.4
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 4.6e-111 405.2 292 68.2
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 7.8e-111 404.4 299 64.2
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 7.8e-111 404.4 302 65.6
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.0e-110 404.1 294 64.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.0e-110 404.1 294 64.3
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.0e-110 404.1 293 65.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.7e-110 403.3 300 66.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.3e-110 402.9 294 64.6
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.9e-110 402.1 291 66.3
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 8.6e-110 401.0 295 66.8
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 8.6e-110 401.0 294 64.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.5e-109 400.2 300 64.3
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 5.6e-109 398.3 296 62.8
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.2e-108 397.1 294 64.6
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.1e-108 396.4 318 61.0
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.6e-108 395.6 296 65.5
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.7e-108 395.2 308 62.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-107 394.0 287 65.9
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.1e-107 394.0 302 62.6
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-107 393.7 294 63.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.0e-107 392.1 293 64.2
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.0e-107 392.1 295 63.1
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 6.8e-107 391.3 322 58.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 6.8e-107 391.3 294 62.9
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 8.9e-107 391.0 294 64.6
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-106 390.2 294 64.3
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.0e-106 389.8 298 63.8
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.6e-106 389.4 303 62.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.6e-106 389.4 294 63.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 7.6e-106 387.9 296 63.2
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 9.9e-106 387.5 296 61.5
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.3e-105 387.1 315 58.7
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.3e-105 387.1 294 62.6
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.7e-105 386.7 295 62.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.8e-105 385.6 294 62.6
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 4.9e-105 385.2 294 63.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 6.4e-105 384.8 294 63.9
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 8.4e-105 384.4 296 62.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 8.4e-105 384.4 294 63.9
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.1e-104 384.0 292 62.3
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.9e-104 383.3 314 60.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.9e-104 383.3 314 60.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.9e-104 383.3 294 63.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.9e-104 383.3 294 63.3
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.9e-104 383.3 294 63.3
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.4e-104 382.9 298 62.4
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 3.2e-104 382.5 296 60.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 4.1e-104 382.1 294 61.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 4.1e-104 382.1 326 58.9
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 5.4e-104 381.7 296 61.1
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.1e-104 381.3 294 61.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.1e-104 381.3 294 61.9
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 9.2e-104 380.9 296 63.5
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 9.2e-104 380.9 297 62.0
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-103 379.8 296 63.2
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.1e-103 379.8 307 61.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.7e-103 379.4 302 62.3
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.5e-103 379.0 297 63.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-102 377.5 296 62.5
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-102 376.7 295 62.7
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.7e-102 376.7 347 54.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.7e-102 376.7 304 60.5
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.3e-102 376.3 329 58.7
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.0e-102 375.9 295 61.7
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.1e-101 374.0 293 62.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.5e-101 373.6 294 61.2
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 5.6e-101 371.7 296 60.8
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.8e-100 369.4 293 60.1
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 8.1e-100 367.9 295 60.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.1e-99 367.5 296 60.1
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-99 367.5 296 60.1
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.1e-99 367.5 333 55.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-98 364.0 296 59.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-98 363.6 289 61.9
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 3.8e-97 359.0 294 60.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.4e-97 358.2 289 61.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.4e-97 357.8 289 61.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 7.1e-96 354.8 269 62.5
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-95 354.0 302 59.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.7e-95 352.8 294 57.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.7e-95 352.8 299 57.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 4.6e-95 352.1 299 58.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 8.7e-94 347.8 315 54.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 2.0e-90 336.7 260 60.8
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.6e-90 336.3 299 58.5
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.5e-87 325.9 294 55.4
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.6e-84 315.8 288 53.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.8e-83 313.5 269 58.0
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.9e-81 306.2 312 50.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.1e-80 304.3 217 69.6
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.9e-80 303.5 302 53.0
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 2.4e-80 303.1 291 51.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-79 300.8 260 56.2
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.1e-76 290.0 290 50.7
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.1e-75 286.2 304 53.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.9e-70 269.2 346 41.6
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 5.1e-70 268.9 294 44.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.5e-66 257.3 305 41.3
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.6e-66 256.5 299 43.1
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 7.6e-66 255.0 288 43.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.2e-65 253.4 262 50.4
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.1e-61 241.1 198 60.1
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 3.3e-61 239.6 269 45.4
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.9e-59 231.9 161 68.3
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-55 220.7 200 56.5
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.2e-47 194.5 171 55.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 5.7e-45 185.7 226 44.7
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 9.1e-43 178.3 280 35.4
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 8.5e-33 145.2 114 63.2
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.0e-29 134.0 83 73.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.2e-28 130.6 119 49.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.4e-27 125.9 92 67.4
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.2e-24 116.7 111 49.5
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-23 114.4 73 71.2
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.0e-23 112.1 68 75.0
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 8.0e-23 112.1 92 58.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 8.0e-23 112.1 92 58.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.6e-21 107.1 76 65.8
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.2e-18 98.2 87 51.7
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-17 94.4 77 57.1
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.3e-17 94.0 88 51.1
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.9e-17 93.6 176 34.7
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.3e-16 89.0 77 51.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 2.0e-13 80.9 58 63.8
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 9.8e-13 78.6 58 65.5
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.7e-09 67.8 70 52.9
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.6e-09 65.9 64 50.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.9e-08 64.3 57 49.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 4.3e-08 63.2 47 61.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 2.3e-06 57.4 51 54.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 5.2e-06 56.2 91 33.0


User provided reference genes

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