Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.1e-31 139.4 76 100.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.2e-18 94.7 73 72.6
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.5e-17 91.3 73 69.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 4.6e-17 90.9 73 67.1
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 6.0e-17 90.5 73 65.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 7.8e-17 90.1 73 65.8
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.8e-17 90.1 73 68.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.8e-17 90.1 73 68.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-16 89.7 73 68.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 6.6e-16 87.0 73 64.4
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.6e-16 87.0 73 63.0
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.6e-16 87.0 73 63.0
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.6e-16 87.0 73 63.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 8.6e-16 86.7 73 71.2
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-15 85.9 73 65.8
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.9e-15 85.5 73 68.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.3e-15 84.7 74 66.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.3e-15 84.7 74 66.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 3.3e-15 84.7 73 69.9
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.3e-15 84.3 73 68.5
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 4.3e-15 84.3 77 70.1
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 5.6e-15 84.0 73 65.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.6e-15 84.0 73 64.4
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 7.3e-15 83.6 73 65.8
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 7.3e-15 83.6 73 69.9
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 9.5e-15 83.2 73 67.1
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 9.5e-15 83.2 73 64.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 9.5e-15 83.2 73 65.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 9.5e-15 83.2 73 69.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.2e-14 82.8 73 67.1
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.2e-14 82.8 73 68.5
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.1e-14 82.0 73 61.6
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.1e-14 82.0 73 65.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.8e-14 81.6 73 64.4
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.6e-14 81.3 73 61.6
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.6e-14 81.3 73 64.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.6e-14 81.3 73 61.6
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 3.6e-14 81.3 73 67.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 4.7e-14 80.9 73 65.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.7e-14 80.9 73 68.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.7e-14 80.9 73 68.5
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 6.2e-14 80.5 73 67.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 8.1e-14 80.1 74 63.5
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.1e-13 79.7 73 65.8
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-13 79.3 73 65.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.4e-13 79.3 75 66.7
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-13 79.3 73 63.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-13 79.3 73 63.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.8e-13 79.0 73 63.0
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.8e-13 79.0 73 63.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.8e-13 79.0 73 65.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.4e-13 78.6 73 63.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.4e-13 78.6 73 64.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.8e-13 77.0 73 58.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 8.9e-13 76.6 73 61.6
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 8.9e-13 76.6 73 61.6
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 8.9e-13 76.6 73 60.3
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.2e-12 76.3 74 59.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-12 76.3 74 64.9
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.2e-12 76.3 76 65.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.5e-12 75.9 73 60.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.5e-12 75.9 73 61.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.0e-12 75.5 73 63.0
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.0e-12 75.5 76 56.6
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.6e-12 75.1 101 50.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 4.4e-12 74.3 73 60.3
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.4e-12 74.3 74 64.9
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.4e-12 74.3 74 64.9
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 9.9e-12 73.2 100 50.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 9.9e-12 73.2 73 64.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.3e-11 72.8 73 61.6
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-11 72.8 74 63.5
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.3e-11 72.8 73 58.9
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.7e-11 72.4 72 62.5
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.7e-11 72.4 72 62.5
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.9e-11 71.6 73 57.5
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.9e-11 71.6 73 58.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.9e-11 71.6 73 58.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.8e-11 71.2 73 58.9
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 8.4e-11 70.1 74 62.2
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.1e-10 69.7 73 60.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.1e-10 69.7 73 56.2
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.4e-10 68.6 73 56.2
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.4e-10 68.6 74 54.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.2e-10 68.2 75 60.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.2e-10 68.2 72 59.7
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.2e-10 68.2 72 59.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.1e-10 67.8 75 57.3
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.4e-10 67.4 73 52.1
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 7.1e-10 67.0 73 57.5
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.1e-10 67.0 75 57.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 9.2e-10 66.6 75 58.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.6e-09 65.9 75 57.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.7e-09 65.1 75 53.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.7e-09 65.1 75 53.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.7e-09 65.1 74 52.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.6e-09 64.3 73 53.4
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 6.0e-09 63.9 62 59.7
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 6.0e-09 63.9 70 60.0
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.8e-09 63.5 74 51.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 7.8e-09 63.5 73 53.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.0e-08 63.2 62 59.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-08 62.4 74 51.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 5.1e-08 60.8 78 56.4
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.1e-08 60.8 73 53.4
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 8.7e-08 60.1 73 52.1
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.1e-07 59.7 75 49.3
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.3e-07 57.8 78 50.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 9.6e-07 56.6 56 57.1
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.2e-06 56.2 69 53.6
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.8e-06 55.1 76 50.0


User provided reference genes

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