Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 2.7e-285 984.9 622 100.0
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.2e-123 448.0 591 59.4
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 5.2e-119 432.6 586 54.9
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 3.0e-114 416.8 608 42.4
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 3.9e-114 416.4 599 53.9
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.4e-111 407.9 599 55.4
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.6e-110 403.7 599 47.1
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.4e-109 399.1 596 45.6
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 6.4e-109 399.1 596 52.3
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.1e-108 398.3 630 50.2
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 7.9e-107 392.1 599 50.8
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.0e-106 391.7 603 44.8
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.3e-106 391.3 585 50.4
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 2.3e-106 390.6 596 52.0
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 2.3e-106 390.6 596 50.8
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.7e-106 389.0 607 50.4
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.3e-105 386.7 601 39.6
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 4.3e-105 386.3 587 56.2
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 4.3e-105 386.3 598 47.8
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 7.4e-105 385.6 593 51.4
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.3e-104 384.8 579 49.4
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 1.3e-104 384.8 579 49.6
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 3.7e-104 383.3 575 49.4
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 3.7e-104 383.3 579 54.4
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 4.8e-104 382.9 589 48.9
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.4e-103 381.3 611 45.2
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 3.1e-103 380.2 590 54.2
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 4.0e-103 379.8 576 48.6
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 5.3e-103 379.4 590 55.3
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 1.3e-101 374.8 635 52.0
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 8.4e-101 372.1 582 52.4
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.4e-100 371.3 602 50.2
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 3.2e-100 370.2 582 46.4
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 3.2e-100 370.2 610 47.5
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 2.1e-99 367.5 590 54.2
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 3.9e-98 363.2 578 41.2
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 3.9e-98 363.2 585 49.2
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 5.1e-98 362.8 601 43.8
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 6.7e-98 362.5 606 42.1
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.9e-97 360.9 593 52.8
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 2.5e-97 360.5 549 48.3
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 3.7e-96 356.7 599 52.3
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 3.7e-96 356.7 378 54.8
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 6.2e-96 355.9 582 46.7
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 2.4e-95 354.0 592 49.5
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 2.0e-94 350.9 596 49.2
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 7.6e-94 349.0 599 39.1
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 2.2e-93 347.4 596 49.2
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 3.2e-92 343.6 606 43.4
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 3.2e-92 343.6 608 51.6
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 4.2e-92 343.2 587 43.4
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 5.5e-92 342.8 614 47.1
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 1.2e-91 341.7 597 46.6
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 3.5e-91 340.1 590 50.8
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 6.0e-91 339.3 549 53.9
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 3.0e-90 337.0 597 50.8
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 3.9e-90 336.7 588 46.8
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.9e-89 334.3 567 48.3
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 1.9e-89 334.3 525 51.0
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 2.5e-89 334.0 592 51.7
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 2.5e-89 334.0 602 46.8
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 3.3e-89 333.6 606 49.2
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 2.0e-86 324.3 584 50.0
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 7.7e-86 322.4 579 50.8
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 3.8e-85 320.1 595 45.2
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 4.2e-84 316.6 504 53.0
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.6e-83 314.7 592 50.3
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.4e-82 311.6 593 49.2
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.4e-82 311.6 606 45.0
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.4e-82 311.6 606 45.0
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.4e-82 311.6 579 51.3
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 2.3e-82 310.8 596 48.8
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 1.7e-80 304.7 606 44.7
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 2.2e-80 304.3 601 47.3
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 1.8e-79 301.2 605 42.6
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 1.8e-79 301.2 605 42.6
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 5.3e-79 299.7 593 49.1
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 3.2e-76 290.4 586 42.8
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 3.0e-74 283.9 588 41.5
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 3.9e-74 283.5 513 45.6
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 6.7e-74 282.7 359 55.4
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 2.0e-73 281.2 519 39.1
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.3e-72 278.5 588 48.0
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 5.5e-68 263.1 503 52.3
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.6e-67 261.5 516 46.5
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 3.6e-67 260.4 585 46.0
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.8e-63 248.1 580 45.5
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 1.3e-61 241.9 593 44.0
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 7.2e-60 236.1 366 39.9
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 6.7e-58 229.6 596 43.1
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.2e-57 228.8 397 46.9
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 1.2e-57 228.8 573 45.0
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 7.5e-57 226.1 596 42.8
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-56 225.3 589 29.5
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-56 225.3 589 29.5
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 6.3e-56 223.0 604 42.5
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 1.1e-55 222.2 615 28.0
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.1e-55 222.2 595 40.2
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 1.4e-55 221.9 549 47.0
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 1.0e-53 215.7 591 44.5
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 8.0e-51 206.1 321 65.1
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 4.8e-48 196.8 540 40.9
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 6.3e-48 196.4 519 38.9
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.2e-41 175.6 339 36.9
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 1.7e-32 145.2 213 42.3
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 6.4e-24 116.7 225 36.0
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 4.6e-22 110.5 154 48.7
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 1.9e-20 105.1 153 39.9
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 3.1e-18 97.8 556 40.6
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.5e-17 95.5 205 34.1
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 1.7e-08 65.5 52 61.5
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 6.4e-08 63.5 74 47.3
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 9.2e-07 59.7 51 56.9


User provided reference genes

Program Settings