Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 3.5e-118 428.3 221 100.0
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 4.2e-79 298.5 197 76.6
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 9.4e-79 297.4 195 77.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 7.9e-78 294.3 192 76.6
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 1.5e-76 290.0 191 74.9
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 2.6e-76 289.3 192 74.5
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.6e-76 289.3 192 74.5
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 2.6e-76 289.3 188 78.2
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.6e-76 289.3 191 78.0
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 3.3e-76 288.9 214 69.2
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 7.4e-76 287.7 184 78.8
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 1.3e-75 287.0 190 76.3
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 1.7e-75 286.6 192 74.5
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.7e-75 286.6 192 74.0
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 2.2e-75 286.2 211 68.7
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.3e-75 284.6 192 73.4
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 2.4e-74 282.7 193 73.6
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 3.1e-74 282.3 187 74.9
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 4.1e-74 282.0 189 74.1
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 4.1e-74 282.0 186 76.3
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 4.1e-74 282.0 189 73.5
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 4.1e-74 282.0 192 74.0
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 5.3e-74 281.6 192 72.9
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 1.2e-73 280.4 190 74.2
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 1.5e-73 280.0 192 70.8
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 3.4e-73 278.9 185 74.1
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 3.4e-73 278.9 194 69.6
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 3.4e-73 278.9 192 70.8
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 1.0e-72 277.3 187 74.3
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 1.3e-72 276.9 192 72.4
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 1.3e-72 276.9 186 74.7
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 1.7e-72 276.6 213 68.5
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 3.8e-72 275.4 176 79.0
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 3.8e-72 275.4 192 71.4
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 3.8e-72 275.4 183 76.0
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 5.0e-72 275.0 195 72.8
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 1.4e-71 273.5 203 70.4
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 1.9e-71 273.1 193 70.5
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 3.2e-71 272.3 192 71.4
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 7.2e-71 271.2 192 70.8
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 9.4e-71 270.8 177 76.8
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 1.2e-70 270.4 184 73.4
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 1.2e-70 270.4 200 68.0
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.7e-70 269.2 187 74.9
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 6.1e-70 268.1 186 72.6
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 7.9e-70 267.7 184 72.8
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 1.4e-69 266.9 191 69.6
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 1.8e-69 266.5 186 72.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 2.3e-69 266.2 198 69.2
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 3.0e-69 265.8 191 69.1
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 6.7e-69 264.6 178 76.4
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 1.1e-68 263.8 205 65.9
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 2.0e-68 263.1 188 71.8
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 2.0e-68 263.1 181 73.5
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 9.7e-68 260.8 194 67.0
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 1.3e-67 260.4 184 71.2
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 2.8e-67 259.2 188 72.3
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 3.7e-67 258.8 194 69.1
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 4.8e-67 258.5 186 72.6
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 1.1e-66 257.3 189 68.3
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 1.1e-66 257.3 181 72.9
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 1.8e-66 256.5 186 72.0
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 7.0e-66 254.6 187 67.4
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 7.0e-66 254.6 187 71.1
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 9.1e-66 254.2 225 62.2
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 1.6e-65 253.4 191 66.0
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 7.7e-65 251.1 180 72.8
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 1.0e-64 250.8 187 65.2
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 2.2e-64 249.6 186 65.6
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 2.9e-64 249.2 187 65.8
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 2.9e-64 249.2 182 66.5
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 3.8e-64 248.8 186 65.1
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 1.1e-63 247.3 185 66.5
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 1.9e-63 246.5 185 66.5
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 1.9e-63 246.5 180 74.4
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 4.2e-63 245.4 185 65.9
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 5.5e-63 245.0 198 64.6
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 1.2e-62 243.8 185 65.9
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 2.7e-62 242.7 185 65.9
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 3.0e-61 239.2 188 67.6
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 3.7e-59 232.3 191 67.0
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 2.4e-58 229.6 188 62.8
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 1.2e-57 227.3 174 67.8
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 1.3e-56 223.8 174 66.7
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 2.5e-55 219.5 294 46.6
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 4.4e-52 208.8 208 58.2
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 5.7e-52 208.4 211 57.3
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 4.8e-51 205.3 133 76.7
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 3.1e-50 202.6 185 57.3
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 7.7e-49 198.0 187 60.4
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 1.7e-48 196.8 139 74.1
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 1.7e-48 196.8 169 61.5
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 6.5e-48 194.9 129 77.5
Os10g0555200 Oryza sativa ssp. japonica HOM05D006638 ORTHO05D008246 2.5e-47 193.0 178 59.0
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 5.5e-47 191.8 130 73.8
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 4.7e-46 188.7 144 70.1
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 8.0e-46 188.0 119 79.8
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 3.0e-45 186.0 116 81.0
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 1.4e-42 177.2 120 75.8
Mapoly0010s0011 Marchantia polymorpha HOM05D006638 ORTHO05D008246 1.9e-39 166.8 167 53.9
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 9.5e-39 164.5 128 68.0
AagrBONN_evm.TU.Sc2ySwM_228.3890 Anthoceros agrestis HOM05D006638 ORTHO05D008246 2.1e-38 163.3 176 51.1
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 6.1e-38 161.8 145 62.1
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 3.0e-37 159.5 109 77.1
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.2e-35 153.3 128 65.6
Pp3c1_23680 Physcomitrium patens HOM05D006638 ORTHO05D008246 3.7e-35 152.5 183 46.4
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 4.9e-35 152.1 130 62.3
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 1.6e-33 147.1 106 71.7
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.9e-31 140.2 98 73.5
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.4e-26 124.0 92 66.3
SMO340G0150 Selaginella moellendorffii HOM05D006638 ORTHO05D008246 4.1e-26 122.5 168 44.6
Pp3c1_23620 Physcomitrium patens HOM05D006638 ORTHO05D008246 1.2e-20 104.4 142 43.0
CBR_g17705 Chara braunii HOM05D006638 ORTHO05D008246 3.9e-16 89.4 171 35.7
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 3.6e-14 82.8 69 60.9
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 4.7e-14 82.4 93 49.5
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 8.1e-14 81.6 49 75.5
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 7.1e-10 68.6 40 75.0
RcHm_v2.0_Chr1g0349061 Rosa chinensis HOM05D006638 ORTHO05D008246 2.1e-09 67.0 44 68.2
Solyc12g035620.2 Solanum lycopersicum HOM05D006638 ORTHO05D008246 4.6e-09 65.9 48 62.5
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 1.7e-08 63.9 43 69.8
SEGI_24864 Sequoiadendron giganteum HOM05D006638 ORTHO05D008246 2.5e-07 60.1 66 48.5


User provided reference genes

Program Settings