Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 9.9e-89 330.1 167 100.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 7.6e-73 277.3 168 82.1
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.2e-71 271.6 167 81.4
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.1e-70 269.2 163 81.6
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 3.5e-70 268.5 166 78.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.0e-69 266.9 167 77.2
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.1e-68 263.5 164 76.8
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 78.4
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.5e-68 263.1 164 76.8
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.3e-68 261.9 166 77.1
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.3e-68 261.9 164 76.8
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 7.3e-68 260.8 170 75.9
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 9.6e-68 260.4 167 78.4
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 9.6e-68 260.4 193 72.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.3e-67 260.0 164 76.8
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.3e-67 260.0 164 76.8
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.8e-67 258.8 167 76.6
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.6e-67 258.5 167 77.2
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.6e-67 258.5 153 80.4
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.8e-67 258.1 166 74.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 4.8e-67 258.1 167 73.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 6.2e-67 257.7 164 76.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 6.2e-67 257.7 167 74.3
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 8.1e-67 257.3 166 75.3
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 8.1e-67 257.3 166 74.7
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.4e-66 256.5 166 77.1
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.8e-66 256.1 164 75.6
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.8e-66 256.1 166 74.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 3.1e-66 255.4 164 76.8
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.0e-66 255.0 167 71.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.0e-66 255.0 166 74.1
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 6.9e-66 254.2 167 71.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 71.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.5e-65 253.1 164 75.6
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 73.7
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 3.4e-65 251.9 166 75.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 5.8e-65 251.1 167 74.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.8e-65 251.1 166 73.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 73.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 73.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 73.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-64 250.0 163 75.5
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.3e-64 250.0 167 74.3
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.7e-64 249.6 166 71.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.2e-64 249.2 167 71.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.2e-64 249.2 167 73.1
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.7
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 71.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.8e-64 248.4 160 75.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.1
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.7
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.9e-64 248.1 166 72.3
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.9e-64 248.1 166 73.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 6.4e-64 247.7 166 74.7
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 73.1
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 73.1
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 73.1
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 70.1
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 73.1
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.9e-63 246.1 167 72.5
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.4e-63 245.7 169 72.2
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 72.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.4e-63 244.6 164 73.2
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 9.3e-63 243.8 161 72.7
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.6e-62 243.0 167 71.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 72.9
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 4.6e-62 241.5 186 67.7
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.3e-61 240.0 159 73.0
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.8e-61 239.6 204 62.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.3e-61 239.2 169 70.4
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.9e-61 238.4 169 69.8
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 5.1e-61 238.0 167 69.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 6.7e-61 237.7 154 76.0
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 6.2e-59 231.1 168 67.3
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 8.1e-59 230.7 137 79.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-58 230.3 167 69.5
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 6.9e-58 227.6 163 68.1
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 9.0e-58 227.3 118 94.9
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.0e-58 227.3 191 62.3
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 9.0e-58 227.3 166 64.5
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.2e-57 226.9 166 66.3
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.8e-57 224.6 167 62.3
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.2e-56 222.6 190 59.5
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.4e-55 219.9 158 67.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.9e-55 219.5 137 74.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.2e-54 216.9 159 66.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.1e-54 216.1 158 65.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 4.6e-54 214.9 140 71.4
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.9e-54 214.2 158 65.8
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 7.9e-54 214.2 163 62.6
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 8.7e-53 210.7 159 61.6
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.1e-52 210.3 159 61.0
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.1e-52 210.3 159 61.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.5e-52 209.9 157 63.7
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.5e-52 209.1 159 61.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 9.6e-52 207.2 135 71.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.3e-51 206.8 165 61.2
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.1e-51 206.1 128 75.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 2.8e-51 205.7 159 60.4
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.7e-51 205.3 174 61.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 4.0e-50 201.8 149 61.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.0e-50 201.8 117 84.6
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.3e-50 201.4 139 69.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 6.9e-50 201.1 136 68.4
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 6.9e-50 201.1 159 61.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.2e-49 200.3 122 79.5
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.6e-49 197.6 162 59.3
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.7e-48 196.4 127 71.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-48 196.1 162 58.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.2e-48 196.1 128 71.9
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.9e-48 195.7 116 81.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-47 193.7 159 56.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-47 193.4 167 56.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 4.2e-47 191.8 136 63.2
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.1e-47 191.0 162 58.0
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-43 180.3 116 75.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-43 180.3 116 75.9
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-41 173.7 116 75.0
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 5.5e-39 164.9 137 61.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.8e-37 159.8 118 63.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.3e-37 159.5 113 68.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-35 153.7 162 52.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.2e-35 152.9 167 47.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 8.2e-35 151.0 88 81.8
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 5.3e-34 148.3 163 48.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.3e-32 143.7 167 44.9
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.9e-31 139.8 123 53.7
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 5.5e-31 138.3 132 53.8
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.2e-31 137.9 128 59.4
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.6e-30 136.7 118 55.9
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.3e-29 132.9 141 47.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 4.4e-28 128.6 122 57.4
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 2.8e-27 125.9 76 76.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 4.8e-27 125.2 84 75.0
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.2e-23 112.1 103 50.5
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.2e-23 111.3 167 43.1
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.4e-23 110.9 151 41.1
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.2e-22 110.5 71 71.8
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.7e-22 108.6 70 71.4
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 6.7e-21 104.8 161 40.4
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.0e-20 103.2 74 59.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.0e-20 103.2 74 59.5
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.6e-20 102.8 94 59.6
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.1e-18 95.5 75 69.3
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 7.7e-17 91.3 52 73.1
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 3.8e-16 89.0 59 71.2
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.1e-14 83.2 167 35.3
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 4.7e-14 82.0 75 60.0
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.2e-13 78.6 58 62.1
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 3.7e-11 72.4 54 68.5
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 6.3e-11 71.6 54 64.8
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-10 70.9 50 70.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.4e-10 70.5 49 69.4
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.4e-10 70.5 48 77.1
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 6.5e-08 61.6 40 82.5


User provided reference genes

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