Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 5.7e-92 340.9 170 100.0
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 3.8e-56 221.9 133 81.2
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 3.3e-55 218.8 133 81.2
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 4.3e-55 218.4 133 81.2
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.2e-54 216.9 133 77.4
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.4e-53 213.4 133 75.9
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.4e-53 213.4 133 75.9
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.8e-53 213.0 133 74.4
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.8e-53 213.0 133 74.4
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 1.8e-53 213.0 133 75.2
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.8e-53 213.0 133 76.7
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 2.3e-53 212.6 133 78.2
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 4.0e-53 211.8 131 75.6
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.0e-53 211.8 133 74.4
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 8.9e-53 210.7 133 75.9
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 1.2e-52 210.3 131 75.6
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.5e-52 209.9 133 74.4
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.5e-52 209.9 133 74.4
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.5e-52 209.9 133 75.9
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.6e-52 209.1 131 75.6
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 4.4e-52 208.4 133 75.2
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 5.7e-52 208.0 133 73.7
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 5.7e-52 208.0 133 76.7
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 5.7e-52 208.0 132 76.5
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 5.7e-52 208.0 144 70.8
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 5.7e-52 208.0 133 74.4
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 5.7e-52 208.0 132 76.5
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 7.5e-52 207.6 131 75.6
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 9.8e-52 207.2 133 75.2
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 9.8e-52 207.2 133 75.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 9.8e-52 207.2 133 73.7
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 2.2e-51 206.1 133 72.2
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.2e-51 206.1 133 73.7
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 2.2e-51 206.1 133 72.2
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.9e-51 205.7 133 73.7
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.9e-51 205.7 133 73.7
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 2.9e-51 205.7 133 73.7
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 3.7e-51 205.3 132 74.2
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 4.9e-51 204.9 133 73.7
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 8.3e-51 204.1 133 74.4
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 8.3e-51 204.1 133 73.7
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 3.2e-50 202.2 130 75.4
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 3.2e-50 202.2 133 74.4
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 4.1e-50 201.8 133 72.2
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 7.0e-50 201.1 131 74.8
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.6e-49 199.9 133 74.4
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.6e-49 199.9 141 68.8
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.6e-49 199.9 133 72.2
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.0e-49 199.5 133 75.2
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 2.7e-49 199.1 131 74.0
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 2.7e-49 199.1 128 72.7
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 4.6e-49 198.4 131 72.5
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 4.6e-49 198.4 133 71.4
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 4.6e-49 198.4 131 74.0
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 4.6e-49 198.4 132 75.8
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 4.6e-49 198.4 136 72.8
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.0e-48 197.2 133 69.9
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.3e-48 196.8 131 70.2
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.3e-48 196.1 125 74.4
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 3.0e-48 195.7 131 71.0
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 5.0e-48 194.9 131 71.0
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 5.0e-48 194.9 131 71.0
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 5.0e-48 194.9 131 71.0
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.0e-48 194.9 133 71.4
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.0e-48 194.9 133 71.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 6.6e-48 194.5 131 72.5
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 8.6e-48 194.1 126 72.2
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 8.6e-48 194.1 133 72.9
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.1e-47 193.7 131 70.2
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.1e-47 193.7 131 71.0
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.9e-47 193.0 131 70.2
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 2.5e-47 192.6 131 70.2
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 4.3e-47 191.8 131 74.0
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.3e-47 191.8 136 71.3
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 4.3e-47 191.8 132 71.2
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 7.3e-47 191.0 131 69.5
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 7.3e-47 191.0 132 70.5
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 7.3e-47 191.0 131 71.0
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 9.5e-47 190.7 133 66.9
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.2e-46 190.3 131 71.0
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.8e-46 189.1 131 69.5
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 6.2e-46 188.0 133 68.4
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 6.2e-46 188.0 132 68.9
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 8.0e-46 187.6 140 66.4
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.0e-45 187.2 133 72.9
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.0e-45 187.2 145 64.1
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.4e-45 186.8 140 66.4
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 1.4e-45 186.8 141 66.0
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.8e-45 186.4 136 68.4
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 2.3e-45 186.0 140 66.4
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.3e-45 186.0 132 64.4
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.1e-45 185.7 144 64.6
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 6.8e-45 184.5 131 66.4
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 6.8e-45 184.5 131 66.4
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 6.8e-45 184.5 134 65.7
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 8.9e-45 184.1 138 65.9
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 8.9e-45 184.1 138 65.9
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 2.0e-44 183.0 129 69.8
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.0e-44 183.0 136 66.9
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 2.0e-44 183.0 132 66.7
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 2.6e-44 182.6 129 69.8
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 3.4e-44 182.2 127 68.5
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 4.4e-44 181.8 125 74.4
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 5.8e-44 181.4 133 65.4
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.3e-43 180.3 125 69.6
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.3e-43 180.3 133 65.4
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.4e-43 177.9 158 57.0
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 8.3e-43 177.6 172 54.1
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 2.7e-41 172.6 133 64.7
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 7.8e-41 171.0 134 62.7
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.5e-39 166.8 131 64.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 1.9e-39 166.4 104 77.9
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 2.4e-34 149.4 130 57.7
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 5.4e-34 148.3 129 55.8
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 7.1e-34 147.9 133 60.2
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 2.7e-33 146.0 131 57.3
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.7e-33 146.0 129 55.8
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 2.7e-33 146.0 95 73.7
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.1e-29 134.0 93 68.8
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.8e-29 133.3 134 49.3
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 2.3e-24 116.3 72 77.8
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 5.1e-24 115.2 71 76.1
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 6.6e-24 114.8 71 74.6
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 4.3e-23 112.1 75 68.0
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.6e-22 109.0 75 66.7
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 8.1e-22 107.8 62 80.6
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 8.1e-22 107.8 62 80.6
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 8.1e-22 107.8 76 65.8
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.1e-21 105.9 72 69.4
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.0e-21 105.5 72 68.1
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.5e-20 103.6 62 75.8
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 1.5e-20 103.6 65 75.4
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 2.0e-20 103.2 86 54.7
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 3.4e-20 102.4 118 43.2
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 7.6e-20 101.3 62 74.2
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 9.9e-20 100.9 72 66.7
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 1.7e-19 100.1 70 65.7
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.4e-18 97.1 78 62.8
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 3.9e-16 89.0 64 68.8
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.5e-15 86.3 77 54.5
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 3.1e-13 79.3 56 66.1
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 6.9e-13 78.2 74 50.0
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.3e-11 73.9 116 34.5
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.8e-11 72.4 52 69.2
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.9e-09 64.7 74 43.2
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 3.9e-08 62.4 58 53.4
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 6.7e-08 61.6 74 36.5
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 8.7e-08 61.2 126 27.8
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 3.7e-06 55.8 39 66.7
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 4.8e-06 55.5 36 72.2
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 6.2e-06 55.1 28 82.1
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 8.1e-06 54.7 28 85.7
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 8.1e-06 54.7 28 85.7


User provided reference genes

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