Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 0.0e+00 2018.8 1049 100.0
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 4.1e-108 397.1 551 46.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.1e-103 382.5 545 45.7
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 7.5e-102 376.3 662 40.0
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 4.6e-99 367.1 538 44.8
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 2.0e-94 351.7 608 41.3
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 1.2e-91 342.4 757 36.5
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 2.1e-91 341.7 704 37.6
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.6e-91 340.5 554 41.5
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 7.8e-91 339.7 708 37.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 1.0e-90 339.3 750 36.5
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 3.0e-90 337.8 553 41.8
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.5e-89 335.5 698 38.5
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.9e-89 335.1 569 41.7
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 4.3e-89 334.0 734 36.0
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 1.6e-88 332.0 653 38.3
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 4.7e-88 330.5 559 41.1
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 8.1e-88 329.7 555 40.4
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.1e-87 329.3 554 40.8
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.2e-86 325.9 555 41.1
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 4.9e-85 320.5 627 38.6
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.1e-83 315.1 568 41.2
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.5e-83 314.3 554 39.7
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 1.0e-82 312.8 768 34.6
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.3e-82 312.4 765 34.5
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 6.6e-82 310.1 607 39.5
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.7e-82 309.7 578 39.4
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 4.3e-81 307.4 733 34.5
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 9.6e-81 306.2 574 40.2
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.2e-80 305.8 660 35.5
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.1e-80 305.1 562 39.3
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 3.6e-80 304.3 549 38.1
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.4e-79 301.6 565 39.8
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 3.1e-79 301.2 608 38.5
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 4.0e-79 300.8 646 37.6
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.2e-78 299.3 539 39.1
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 4.4e-78 297.4 609 38.9
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 5.8e-78 297.0 551 37.9
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 5.8e-78 297.0 605 36.9
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 2.2e-77 295.0 510 39.8
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.8e-77 294.3 552 39.7
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 4.9e-77 293.9 603 37.8
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.4e-77 293.1 803 33.6
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 1.4e-76 292.4 610 35.2
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.4e-76 292.4 573 37.0
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 4.2e-76 290.8 570 38.4
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 4.2e-76 290.8 566 39.4
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 2.3e-74 285.0 538 37.2
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 5.1e-74 283.9 598 35.8
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 2.5e-73 281.6 590 39.7
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.3e-73 280.8 709 34.4
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.3e-72 279.3 618 35.4
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.6e-72 278.9 713 33.9
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.1e-72 278.5 455 42.9
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 6.2e-72 276.9 579 38.0
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 3.4e-70 271.2 581 38.6
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 5.8e-70 270.4 586 36.9
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 6.4e-69 266.9 551 36.8
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.9e-68 265.4 542 39.1
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 7.1e-68 263.5 771 31.1
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.6e-67 262.3 555 35.1
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 3.5e-67 261.2 567 37.9
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 6.0e-67 260.4 497 39.6
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 6.0e-67 260.4 705 34.3
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 7.9e-67 260.0 598 36.6
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 2.5e-65 255.0 576 35.9
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 4.3e-65 254.2 591 36.2
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 5.6e-65 253.8 602 34.6
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 5.6e-65 253.8 593 35.6
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 8.1e-64 250.0 592 35.3
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 3.1e-63 248.1 593 35.4
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 5.8e-62 243.8 433 38.3
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 8.4e-61 240.0 585 34.5
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.4e-60 239.2 433 38.1
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 3.2e-60 238.0 550 36.5
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 4.2e-60 237.7 550 34.5
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 5.5e-60 237.3 607 33.1
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 5.1e-58 230.7 613 33.6
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 1.1e-57 229.6 284 48.9
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 1.5e-57 229.2 557 33.4
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 1.4e-55 222.6 685 32.7
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 2.4e-55 221.9 728 29.4
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 2.4e-55 221.9 728 29.4
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 3.4e-54 218.0 582 32.1
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 7.6e-54 216.9 613 33.1
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 4.9e-53 214.2 645 31.3
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 5.5e-52 210.7 599 31.1
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 7.1e-52 210.3 545 31.2
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.0e-50 206.5 568 30.6
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 4.8e-48 197.6 556 30.2
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 6.3e-48 197.2 548 31.6
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 8.2e-48 196.8 522 31.6
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.1e-47 196.4 548 31.4
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 1.0e-45 189.9 553 31.5
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 2.1e-43 182.2 562 30.2
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 2.7e-43 181.8 377 34.2
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 6.7e-42 177.2 616 30.7
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 3.3e-41 174.9 469 33.7
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 3.3e-41 174.9 504 30.6
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 5.7e-41 174.1 380 36.8
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 2.2e-40 172.2 535 31.0
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.8e-40 171.8 553 28.4
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.1e-39 169.9 520 29.8
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.1e-39 169.9 616 30.0
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 2.6e-38 165.2 591 29.9
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 1.3e-37 162.9 406 34.0
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.5e-29 134.0 155 45.8
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 7.0e-15 87.4 124 41.9
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 1.2e-14 86.7 145 41.4
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.5e-12 77.8 708 21.9
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.1e-07 62.0 228 27.2
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.1e-07 62.0 228 27.2


User provided reference genes

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