Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 3.8e-73 278.1 143 100.0
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 1.1e-32 143.7 147 59.2
Lj3g0012705 Lotus japonicus HOM05D007629 ORTHO05D009511 2.5e-32 142.5 138 59.4
Glyma.12G237100 Glycine max HOM05D007629 ORTHO05D009511 3.3e-32 142.1 142 54.9
Medtr8g037205 Medicago truncatula HOM05D007629 ORTHO05D009511 2.1e-31 139.4 147 56.5
TPR.G1849 Trifolium pratense HOM05D007629 ORTHO05D009511 2.8e-31 139.0 142 58.5
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 1.0e-30 137.1 141 56.7
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 1.4e-30 136.7 144 53.5
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 2.3e-30 136.0 140 60.0
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 4.0e-30 135.2 153 54.2
Haze_03204 Corylus avellana HOM05D007629 ORTHO05D009511 5.2e-30 134.8 139 55.4
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 6.8e-30 134.4 143 55.2
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 2.6e-29 132.5 113 62.8
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 2.6e-29 132.5 109 64.2
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 3.4e-29 132.1 139 54.0
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 1.7e-28 129.8 147 53.7
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 3.7e-28 128.6 145 55.2
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 6.4e-28 127.9 164 48.8
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 6.4e-28 127.9 149 50.3
VMungo1127G0677 Vigna mungo HOM05D007629 ORTHO05D009511 4.1e-27 125.2 142 50.7
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 7.0e-27 124.4 146 48.6
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 1.2e-26 123.6 147 51.7
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 1.6e-26 123.2 145 49.0
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 2.7e-26 122.5 147 53.1
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 3.5e-26 122.1 146 47.9
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 3.5e-26 122.1 149 53.7
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 1.0e-25 120.6 137 52.6
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 1.0e-25 120.6 153 49.7
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 2.3e-25 119.4 159 49.7
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 6.6e-25 117.9 137 53.3
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 6.6e-25 117.9 113 60.2
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 6.6e-25 117.9 139 50.4
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 8.6e-25 117.5 163 49.1
TWI53G0001 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 1.1e-24 117.1 137 51.1
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 1.5e-24 116.7 154 47.4
Potri.001G266500 Populus trichocarpa HOM05D007629 ORTHO05D009511 1.5e-24 116.7 144 50.0
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 1.5e-24 116.7 92 60.9
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 1.9e-24 116.3 143 51.0
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 2.5e-24 115.9 96 65.6
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 2.5e-24 115.9 96 66.7
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 2.5e-24 115.9 156 51.9
TWI53G0918 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 2.5e-24 115.9 100 61.0
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 3.3e-24 115.5 105 64.8
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 4.3e-24 115.2 124 52.4
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 5.6e-24 114.8 139 49.6
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 7.3e-24 114.4 167 47.9
Sc11g0009160 Simmondsia chinensis HOM05D007629 ORTHO05D009511 9.5e-24 114.0 141 49.6
QL04p006494 Quercus lobata HOM05D007629 ORTHO05D009511 2.1e-23 112.8 138 48.6
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 3.6e-23 112.1 139 48.9
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 4.7e-23 111.7 141 48.2
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 8.0e-23 110.9 157 49.0
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 1.1e-22 110.5 103 60.2
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 1.1e-22 110.5 162 46.9
Cpa.g.c29394.2 Carica papaya HOM05D007629 ORTHO05D009511 1.4e-22 110.2 99 59.6
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 6.8e-22 107.8 141 53.9
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 2.2e-20 102.8 152 46.7
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 8.3e-20 100.9 141 45.4
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 1.4e-19 100.1 145 42.8
Nitab4.5_0026617g0010 Nicotiana tabacum HOM05D007629 ORTHO05D009511 1.9e-19 99.8 126 48.4
Cfa010767 Carpinus fangiana HOM05D007629 ORTHO05D009511 3.2e-19 99.0 123 52.0
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 4.1e-19 98.6 182 41.2
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 5.4e-19 98.2 110 56.4
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 9.2e-19 97.4 120 46.7
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 4.6e-18 95.1 111 49.5
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 4.6e-18 95.1 104 49.0
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 4.6e-18 95.1 104 49.0
Sed0017474 Sechium edule HOM05D007629 ORTHO05D009511 4.6e-18 95.1 90 58.9
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 2.3e-17 92.8 198 38.9
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 5.0e-17 91.7 198 38.4
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 6.6e-17 91.3 156 42.3
Hund16629 Selenicereus undatus HOM05D007629 ORTHO05D009511 7.3e-16 87.8 115 47.8
MBI01_g26744_MAGBIO Magnolia biondii HOM05D007629 ORTHO05D009511 9.5e-16 87.4 105 51.4
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 4.7e-15 85.1 136 44.1
Rhsim01G0129300 Rhododendron simsii HOM05D007629 ORTHO05D009511 1.1e-14 84.0 132 47.7
Aa31sc522G10 Aethionema arabicum HOM05D007629 ORTHO05D009511 1.8e-14 83.2 136 46.3
ATR0332G023 Amborella trichopoda HOM05D007629 ORTHO05D009511 3.1e-14 82.4 143 38.5
AT1G07985 Arabidopsis thaliana HOM05D007629 ORTHO05D009511 6.8e-14 81.3 127 42.5
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 1.5e-13 80.1 102 47.1
AUR62023067 Chenopodium quinoa HOM05D007629 ORTHO05D009511 1.5e-13 80.1 148 41.2
AL1G18320 Arabidopsis lyrata HOM05D007629 ORTHO05D009511 2.0e-13 79.7 127 41.7
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 5.8e-13 78.2 102 46.1
BcaB02g06696 Brassica carinata HOM05D007629 ORTHO05D009511 1.3e-12 77.0 102 46.1
BraA06t23712Z Brassica rapa HOM05D000280 ORTHO05D000632 1.7e-12 76.6 102 46.1
CDE05G0903 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.7e-12 76.6 93 47.3
HPP92_009584 Vanilla planifolia HOM05D007629 ORTHO05D009511 8.3e-12 74.3 128 36.7
Carub.0001s0734 Capsella rubella HOM05D007629 ORTHO05D009511 2.4e-11 72.8 102 45.1
CDE10G0639 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 3.2e-11 72.4 100 40.0
Sp1g06620 Schrenkiella parvula HOM05D007629 ORTHO05D009511 9.2e-11 70.9 127 38.6
Peaxi162Scf00953g00011 Petunia axillaris HOM05D007629 ORTHO05D009511 2.1e-10 69.7 91 51.6
CARHR007770 Cardamine hirsuta HOM05D007629 ORTHO05D009511 2.7e-10 69.3 124 37.1
BraA08t35446Z Brassica rapa HOM05D000280 ORTHO05D000632 1.0e-09 67.4 93 46.2
CDE10G1066 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.7e-09 66.6 122 35.2
SEGI_12647 Sequoiadendron giganteum HOM05D057847 ORTHO05D009511 1.7e-09 66.6 93 38.7
SEGI_40980 Sequoiadendron giganteum HOM05D057847 ORTHO05D009511 1.7e-09 66.6 93 38.7
BcaB03g13359 Brassica carinata HOM05D007629 ORTHO05D009511 3.0e-09 65.9 88 45.5
Thhalv10009537m.g Eutrema salsugineum HOM05D007629 ORTHO05D009511 3.9e-09 65.5 121 38.0
A09p66070 Brassica napus HOM05D001466 ORTHO05D001452 8.6e-09 64.3 109 38.5
BraA09t41945Z Brassica rapa HOM05D001466 ORTHO05D001452 8.6e-09 64.3 96 39.6
Ah.10g038830 Amaranthus hybridus HOM05D007629 ORTHO05D009511 2.5e-08 62.8 103 44.7
CDE05G1807 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 9.5e-08 60.8 110 36.4
CDE05G3301 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 9.5e-08 60.8 102 39.2
BcaC07g42509 Brassica carinata HOM05D007629 ORTHO05D009511 2.1e-07 59.7 146 32.9
C08p50220 Brassica napus HOM05D001466 ORTHO05D001452 8.1e-07 57.8 109 34.9
SHI04088 Sapria himalayana HOM05D007629 ORTHO05D009511 4.0e-06 55.5 108 34.3
Os03g0623100 Oryza sativa ssp. japonica HOM05D064474 ORTHO05D009511 8.9e-06 54.3 139 28.8


User provided reference genes

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