Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 5.5e-212 740.7 378 100.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-98 362.5 389 55.3
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 4.5e-97 359.0 392 55.9
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-96 357.1 392 55.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.2e-95 351.7 392 55.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.1e-90 337.8 382 53.1
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.2e-89 334.3 404 51.7
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.2e-88 330.1 404 51.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-88 329.3 392 50.5
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-88 329.3 392 50.5
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.8e-88 329.3 407 51.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.0e-88 328.9 391 52.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.2e-87 326.2 387 52.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.2e-87 325.9 401 51.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.7e-86 323.2 341 56.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.3e-84 316.2 388 52.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.7e-84 315.5 391 50.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-83 314.3 392 51.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.3e-83 312.0 392 50.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.4e-82 310.8 391 50.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 4.1e-82 309.3 411 46.2
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.5e-81 307.4 390 50.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 2.6e-81 306.6 407 48.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.4e-79 300.8 411 47.4
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.9e-79 300.4 402 48.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 7.9e-78 295.0 391 48.8
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.8e-77 293.9 388 49.5
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 5.2e-77 292.4 399 47.1
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 4.8e-75 285.8 424 44.6
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 6.3e-75 285.4 377 50.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-74 284.6 415 47.5
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 9.1e-74 281.6 383 49.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.5e-72 275.4 388 45.9
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.2e-71 272.7 400 45.5
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.5e-71 272.3 392 47.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 9.4e-71 271.6 407 47.4
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.4e-69 267.7 396 42.4
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.3e-69 266.9 409 44.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.2e-69 265.8 428 42.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.8e-69 265.0 388 47.9
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.3e-68 263.1 424 44.1
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 7.5e-68 261.9 417 42.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.7e-67 260.8 401 45.4
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.2e-67 260.4 378 45.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.2e-67 260.4 391 45.8
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.2e-67 260.4 323 51.1
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.7e-67 259.6 420 43.6
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.2e-67 258.5 395 45.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.4e-66 257.7 403 45.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.8e-66 257.3 383 45.7
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.4e-66 256.9 393 45.5
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.3e-66 255.8 390 42.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 7.0e-66 255.4 393 45.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-66 255.0 258 56.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.6e-65 254.2 388 44.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.0e-65 253.8 409 44.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.9e-65 252.3 388 44.1
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.7e-65 251.9 400 45.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.8e-64 249.6 401 45.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.9e-63 247.3 395 43.0
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.2e-62 244.6 420 43.1
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.6e-62 244.2 421 42.0
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.1e-62 243.8 400 44.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 2.7e-62 243.4 398 43.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.7e-62 243.4 393 41.7
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.7e-62 243.4 395 44.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-61 241.1 400 45.0
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.8e-61 240.7 401 43.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 8.8e-61 238.4 421 41.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-60 238.0 391 42.7
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.2e-60 238.0 426 40.1
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.0e-60 237.3 394 43.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.4e-60 236.5 419 42.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 6.3e-59 232.3 389 43.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 6.3e-59 232.3 326 46.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.1e-58 229.6 437 39.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.4e-58 229.2 400 42.5
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.0e-57 227.3 426 39.4
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 7.7e-57 225.3 391 40.4
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-56 223.4 384 39.3
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.8e-56 223.0 378 43.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 6.5e-56 222.2 387 39.3
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.5e-55 219.2 371 42.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.1e-54 215.7 387 38.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 8.0e-54 215.3 389 41.1
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 8.8e-53 211.8 420 39.3
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.3e-51 208.0 396 42.2
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-51 207.6 399 39.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-51 207.6 399 39.6
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-51 207.6 369 42.0
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.7e-51 206.5 320 46.6
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.3e-51 205.7 269 49.1
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-50 204.5 399 39.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 7.0e-50 202.2 422 37.9
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.7e-49 200.3 383 37.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.5e-49 199.9 395 40.5
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 4.5e-49 199.5 416 37.7
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 7.8e-49 198.7 414 37.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.3e-48 197.2 419 37.7
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 5.0e-48 196.1 417 37.6
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 6.6e-48 195.7 417 38.1
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 6.6e-48 195.7 414 37.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 6.6e-48 195.7 415 37.3
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-47 194.1 412 36.4
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.7e-46 189.5 392 38.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 6.4e-43 179.1 419 34.8
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.1e-42 176.4 276 44.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 5.4e-42 176.0 419 36.0
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.0e-42 175.6 419 36.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.0e-41 174.1 337 41.2
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.7e-41 173.7 427 35.6
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.3e-40 170.6 255 43.9
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 5.6e-39 166.0 420 34.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 7.3e-39 165.6 400 36.0
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 7.3e-39 165.6 420 34.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 9.5e-39 165.2 389 34.4
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.8e-38 163.7 418 34.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 8.0e-38 162.2 298 40.3
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 6.8e-37 159.1 495 30.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 6.8e-37 159.1 248 43.1
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.2e-36 158.3 254 39.8
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.2e-35 154.1 207 45.4
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 3.7e-35 153.3 196 49.5
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 4.9e-35 152.9 199 44.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 8.3e-35 152.1 220 41.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.3e-35 152.1 248 38.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.4e-34 149.4 214 45.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.4e-34 149.4 192 46.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-33 147.9 222 39.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 2.7e-33 147.1 244 41.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.7e-33 147.1 209 43.5
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.6e-33 146.4 245 39.6
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 7.8e-33 145.6 406 33.0
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.0e-32 145.2 340 36.8
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.3e-32 144.1 219 42.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.6e-32 142.1 232 37.5
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.5e-31 141.4 214 41.1
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-31 141.0 245 38.0
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 5.6e-31 139.4 261 41.0
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.6e-30 137.9 417 32.4
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.1e-30 137.5 401 29.2
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 6.2e-30 136.0 212 41.0
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 6.2e-30 136.0 224 38.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.1e-29 133.7 441 31.1
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 6.8e-29 132.5 217 41.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 3.4e-28 130.2 256 37.9
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 4.9e-27 126.3 206 41.3
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 6.4e-27 125.9 247 42.5
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 8.3e-27 125.6 220 40.9
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.4e-26 122.9 206 40.3
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.4e-26 122.9 196 43.4
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 9.2e-26 122.1 198 40.9
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 6.0e-25 119.4 209 39.2
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 9.5e-23 112.1 210 39.5
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.8e-22 110.5 198 37.4
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.0e-20 104.4 89 55.1
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.6e-20 104.0 170 44.1
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.4e-20 103.6 215 39.1
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.4e-19 99.4 134 47.8
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-18 97.4 133 46.6
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.4e-18 97.4 133 46.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-18 97.4 135 45.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.8e-14 84.0 133 40.6
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.6e-14 83.6 215 35.3
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.2e-14 82.8 158 40.5
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.2e-13 79.7 125 43.2
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 6.2e-06 56.2 47 53.2
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 8.1e-06 55.8 194 29.9


User provided reference genes

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