Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 1.9e-101 372.5 188 100.0
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 4.1e-99 364.8 187 96.3
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 4.1e-99 364.8 187 96.8
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 9.1e-99 363.6 187 96.3
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 187 96.3
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.2e-98 363.2 187 96.8
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.2e-98 363.2 187 96.3
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.2e-98 363.2 187 96.3
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.5e-98 362.8 187 95.7
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 2.0e-98 362.5 187 96.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 2.0e-98 362.5 187 96.3
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 2.6e-98 362.1 187 95.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.4e-98 361.7 187 95.2
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 3.4e-98 361.7 187 95.7
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 3.4e-98 361.7 187 95.2
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 3.4e-98 361.7 187 96.3
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 4.5e-98 361.3 187 95.2
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 4.5e-98 361.3 187 95.7
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.5e-98 361.3 187 95.7
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 5.9e-98 360.9 187 94.7
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.9e-98 360.9 187 94.7
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 7.7e-98 360.5 187 95.2
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 7.7e-98 360.5 187 95.7
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.0e-97 360.1 187 95.7
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.3e-97 359.8 187 95.2
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.3e-97 359.8 187 95.2
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 1.3e-97 359.8 185 95.7
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 2.2e-97 359.0 187 94.7
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.2e-97 359.0 187 94.7
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.2e-97 359.0 187 94.7
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.1
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.7
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.7
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 2.9e-97 358.6 186 95.2
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 95.7
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.1
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.1
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.1
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.7
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 2.9e-97 358.6 187 94.1
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 3.8e-97 358.2 187 94.1
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 3.8e-97 358.2 187 94.7
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 5.0e-97 357.8 187 94.1
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.0e-97 357.8 187 94.7
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.5e-97 357.5 187 94.7
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.5e-97 357.5 187 94.1
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 6.5e-97 357.5 187 94.7
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 8.5e-97 357.1 185 95.1
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 8.5e-97 357.1 187 94.1
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 8.5e-97 357.1 187 94.7
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 8.5e-97 357.1 185 95.1
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 8.5e-97 357.1 185 94.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.1e-96 356.7 186 94.6
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.1e-96 356.7 187 93.6
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.4e-96 356.3 187 93.0
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.4e-96 356.3 187 93.6
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.4e-96 356.3 187 93.6
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 1.9e-96 355.9 187 93.6
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.9e-96 355.9 187 93.6
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.9e-96 355.9 187 93.6
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.9e-96 355.9 187 93.6
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.5e-96 355.5 191 93.2
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 3.2e-96 355.1 187 94.1
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 94.1
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.6
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.6
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 4.2e-96 354.8 187 93.0
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 5.5e-96 354.4 187 93.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 5.5e-96 354.4 186 93.5
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.5e-96 354.4 185 94.6
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 5.5e-96 354.4 186 94.1
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 7.2e-96 354.0 187 93.0
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 7.2e-96 354.0 187 93.6
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 9.4e-96 353.6 187 93.6
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 9.4e-96 353.6 187 93.0
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 9.4e-96 353.6 187 93.0
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.6e-95 352.8 185 93.5
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.6e-95 352.8 185 93.5
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.6e-95 352.8 185 93.5
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.6e-95 352.8 186 93.5
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.6e-95 352.8 187 92.0
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.1e-95 352.4 187 93.0
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.1e-95 352.4 187 93.0
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.1e-95 352.4 187 93.0
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 2.7e-95 352.1 187 93.0
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 4.6e-95 351.3 185 93.5
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 4.6e-95 351.3 185 93.5
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.6e-95 351.3 187 91.4
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.6e-95 351.3 187 92.5
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.6e-95 351.3 187 92.5
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 7.9e-95 350.5 187 92.0
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.0e-94 350.1 188 93.1
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.0e-94 350.1 186 93.0
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.3e-94 349.0 187 91.4
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 3.0e-94 348.6 187 91.4
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 5.1e-94 347.8 187 91.4
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.7e-94 347.4 187 92.0
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 3.3e-93 345.1 195 89.7
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 5.7e-93 344.4 180 93.9
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 1.4e-91 339.7 215 80.9
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.2e-90 336.7 212 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.6e-90 335.5 187 87.7
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.3e-89 333.2 187 88.2
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.9e-88 329.3 218 78.4
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.7e-87 324.7 187 87.2
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 8.8e-86 320.5 187 82.9
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 1.1e-85 320.1 187 86.1
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.7e-84 316.2 168 92.9
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 4.8e-84 314.7 187 86.1
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 3.1e-83 312.0 187 80.2
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.3e-78 295.8 187 82.4
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.7e-78 294.3 186 82.3
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.7e-78 294.3 186 82.3
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.5e-77 293.1 187 81.3
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 2.0e-77 292.7 187 81.3
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.4e-77 291.6 186 81.7
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 4.4e-77 291.6 166 88.6
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 5.7e-77 291.2 187 81.3
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.4e-75 286.6 150 96.0
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.4e-75 285.8 187 79.1
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.6e-71 273.1 187 74.9
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 4.8e-68 261.5 134 94.8
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.3e-60 234.6 134 85.1
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 8.3e-60 234.2 124 93.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.1e-59 233.8 174 65.5
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-59 233.4 180 68.9
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.8e-54 216.5 123 87.0
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 3.0e-54 215.7 148 76.4
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.9e-52 208.4 120 88.3
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 1.7e-49 199.9 186 61.3
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 5.8e-45 184.9 182 51.6
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 8.6e-41 171.0 85 97.6
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.1e-40 170.6 165 53.3
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 9.5e-40 167.5 83 97.6
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.2e-39 167.2 123 72.4
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.1e-35 154.1 75 98.7
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.2e-35 152.5 75 97.3
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.7e-31 138.7 71 94.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.1e-27 125.6 70 88.6
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.2e-27 124.4 70 87.1
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 2.0e-21 106.7 58 84.5
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-19 100.9 54 90.7
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.6e-18 97.1 108 54.6
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.7e-18 96.3 109 52.3
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.8e-14 83.6 47 80.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 4.0e-14 82.4 52 73.1
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 4.0e-14 82.4 90 54.4
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 7.6e-13 78.2 41 95.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.7e-12 77.0 50 76.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 6.4e-12 75.1 39 94.9
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-11 72.8 42 85.7
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-11 72.8 42 85.7
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.1e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 9.0e-06 54.7 69 43.5


User provided reference genes

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