Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-43 177.6 91 100.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-17 93.2 87 59.8
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.9e-17 92.4 83 65.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.5e-17 92.0 69 69.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.5e-17 90.9 76 63.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.5e-17 90.9 92 55.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 7.2e-17 90.5 84 61.9
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-16 89.7 72 66.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.2e-16 89.7 80 56.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-16 89.4 88 52.3
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.7e-16 88.6 88 56.8
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-16 88.2 89 56.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.6e-16 87.8 82 56.1
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.6e-16 87.8 82 56.1
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.6e-16 87.8 76 65.8
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 6.1e-16 87.4 76 64.5
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 7.9e-16 87.0 65 67.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 7.9e-16 87.0 89 52.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.0e-15 86.7 81 61.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-15 86.3 88 55.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-15 86.3 79 58.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.8e-15 85.9 79 58.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.8e-15 85.9 78 57.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.0e-15 85.1 77 61.0
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.9e-15 84.7 72 62.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.1e-15 84.3 89 53.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 6.7e-15 84.0 80 61.2
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 6.7e-15 84.0 87 56.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 8.8e-15 83.6 86 58.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.1e-14 83.2 80 58.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.5e-14 82.8 76 61.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.5e-14 82.8 79 59.5
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.5e-14 82.8 71 64.8
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.5e-14 82.8 88 55.7
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.5e-14 82.0 81 59.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.5e-14 82.0 72 62.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.5e-14 82.0 72 62.5
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.5e-14 82.0 73 57.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.3e-14 81.6 79 59.5
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 4.3e-14 81.3 78 59.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.3e-14 81.3 87 54.0
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 4.3e-14 81.3 86 55.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.3e-14 81.3 89 53.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.7e-14 80.9 67 64.2
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.4e-14 80.5 84 57.1
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 7.4e-14 80.5 79 59.5
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.4e-14 80.5 90 56.7
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.4e-14 80.5 84 58.3
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.7e-14 80.1 73 63.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.7e-13 79.3 75 53.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-13 79.3 74 60.8
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.2e-13 79.0 72 61.1
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.2e-13 79.0 72 61.1
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.2e-13 79.0 72 61.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.2e-13 79.0 69 60.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.8e-13 78.6 62 69.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.8e-13 78.6 68 60.3
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 3.7e-13 78.2 67 62.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 4.8e-13 77.8 73 57.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.8e-13 77.8 74 59.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.3e-13 77.4 79 60.8
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.3e-13 77.4 79 60.8
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.1e-12 76.6 83 51.8
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-12 76.6 73 60.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.4e-12 76.3 80 56.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.8e-12 75.9 69 62.3
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.8e-12 75.9 66 62.1
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.4e-12 75.5 72 61.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.1e-12 75.1 69 60.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 3.1e-12 75.1 71 57.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.1e-12 75.1 78 55.1
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.3e-12 74.3 75 54.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 5.3e-12 74.3 69 59.4
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.9e-12 73.9 73 58.9
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 9.1e-12 73.6 66 60.6
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.2e-11 73.2 71 54.9
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.2e-11 73.2 74 54.1
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-11 73.2 68 58.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-11 72.8 83 55.4
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.5e-11 72.8 66 60.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 66 60.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.0e-11 72.4 67 58.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-11 72.4 70 60.0
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.6e-11 72.0 67 58.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.6e-11 72.0 75 54.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.4e-11 71.6 70 61.4
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.4e-11 71.6 75 54.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.5e-11 71.2 66 60.6
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.5e-11 71.2 65 58.5
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.5e-11 71.2 75 49.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 4.5e-11 71.2 65 56.9
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.5e-11 71.2 73 54.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.5e-11 71.2 68 55.9
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.9e-11 70.9 65 58.5
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 5.9e-11 70.9 81 50.6
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 5.9e-11 70.9 81 50.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.9e-11 70.9 74 52.7
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 7.7e-11 70.5 81 50.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 7.7e-11 70.5 69 58.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.7e-11 70.5 73 54.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.0e-10 70.1 63 61.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-10 70.1 81 53.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.0e-10 70.1 86 52.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-10 69.7 68 57.4
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-10 69.7 75 56.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.7e-10 69.3 87 47.1
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-10 69.3 72 55.6
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-10 68.9 65 60.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.2e-10 68.9 73 52.1
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.9e-10 68.6 68 60.3
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.9e-10 68.6 73 52.1
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 3.8e-10 68.2 72 54.2
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 5.0e-10 67.8 75 52.0
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.0e-10 67.8 84 52.4
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.0e-10 67.8 84 52.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 5.0e-10 67.8 74 51.4
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 6.5e-10 67.4 84 46.4
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 6.5e-10 67.4 67 58.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.5e-10 67.0 71 50.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 8.5e-10 67.0 62 54.8
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-09 66.2 63 52.4
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 70 54.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.4e-09 66.2 67 61.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.9e-09 65.9 59 57.6
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.2e-09 64.7 77 48.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.2e-09 64.7 60 60.0
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.5e-09 64.3 77 48.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 7.2e-09 63.9 61 54.1
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 9.4e-09 63.5 87 44.8
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.4e-09 63.5 64 53.1
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-08 62.8 67 50.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-08 62.4 59 55.9
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.1e-08 62.4 59 57.6
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.7e-08 62.0 63 54.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.7e-08 62.0 66 53.0
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.7e-08 62.0 82 43.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.1e-08 60.8 65 56.9
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 7.9e-08 60.5 70 45.7
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.0e-07 60.1 87 41.4
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.0e-07 60.1 78 43.6
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.4e-07 59.7 70 45.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.8e-07 59.3 63 52.4
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.3e-07 58.9 70 51.4
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 3.9e-07 58.2 75 46.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 3.9e-07 58.2 63 58.7
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.5e-06 56.2 64 53.1
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.4e-06 53.9 63 49.2
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 7.4e-06 53.9 67 46.3


User provided reference genes

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