Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 3778.0 1929 100.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2582.4 2033 67.2
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2541.1 1996 66.2
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2462.6 1999 64.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2422.5 2027 63.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2397.1 2006 63.5
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2392.8 2051 62.3
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2368.6 1997 62.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2358.9 2005 63.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2354.7 2135 60.2
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2354.7 2013 62.2
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2345.1 2008 61.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2316.2 2000 62.0
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2312.3 2003 61.7
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2310.4 1991 63.0
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2308.1 2009 61.5
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2308.1 2013 61.6
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2301.6 1992 61.4
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2295.4 2003 61.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2294.6 2071 61.0
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2294.2 2003 61.6
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2291.5 1975 62.1
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2286.9 1992 61.3
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2274.6 2003 61.5
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2271.9 1993 60.9
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2265.0 2009 60.4
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2264.6 1996 61.4
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2263.8 1996 60.9
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2262.3 1989 61.4
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2261.1 1981 61.2
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2258.8 1987 62.3
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2258.4 2000 61.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2257.6 2005 60.9
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2257.3 2040 59.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2253.4 1993 61.1
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2241.8 2005 60.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2231.4 1997 59.7
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2230.7 1996 60.4
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2230.7 2000 60.4
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2226.4 1853 63.7
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2215.3 1996 60.5
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2209.9 1998 59.2
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2209.1 2012 59.4
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2208.7 2059 58.8
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2186.4 2001 59.3
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2184.8 1978 58.8
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2182.9 2001 59.3
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2182.5 1998 59.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2179.1 2061 57.6
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2164.0 2000 59.1
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2163.7 1993 59.6
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2158.6 2004 58.2
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2152.5 2007 58.3
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2151.3 1948 59.9
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2150.9 2114 55.9
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2150.6 1990 60.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2146.3 1998 58.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2145.9 1995 58.7
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2140.9 2016 58.8
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2140.5 2003 58.6
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2136.3 2019 58.0
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2128.6 1832 62.4
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2120.1 1943 58.0
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2100.5 2121 54.9
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2082.8 2003 57.3
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2059.6 1985 56.4
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2053.9 1988 56.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2048.9 1987 56.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 1682 64.9
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2040.4 1987 55.9
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2035.8 1987 55.9
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2025.8 1848 61.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2021.9 1986 55.4
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2012.7 1986 55.6
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1999.6 2158 53.7
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1992.2 1733 61.4
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1990.3 1983 54.8
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1989.9 2003 54.8
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1981.5 2001 55.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1976.4 1985 54.5
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1976.1 2007 54.2
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1950.6 2015 53.7
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1941.4 1920 54.8
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1930.2 1983 54.3
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1923.7 2000 54.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1915.6 2015 53.5
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1906.3 1985 53.3
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1898.2 1704 59.8
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1796.9 1663 57.7
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1788.1 1716 59.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1775.4 2030 50.6
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1743.0 1982 50.8
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1723.8 1489 62.2
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1661.7 1360 65.4
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1578.1 2006 47.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1559.3 1432 60.1
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1461.4 1987 45.4
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1382.5 1229 59.6
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1363.6 1916 43.6
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1323.9 1186 61.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1287.3 1196 60.5
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1281.2 1569 47.0
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1211.1 1409 49.0
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.4e-308 1063.9 776 69.2
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.5e-305 1053.9 775 69.5
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.4e-300 1037.3 775 68.1
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.3e-280 968.8 832 60.5
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.7e-272 943.0 1047 50.8
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-270 937.2 969 52.8
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.4e-256 889.0 1131 46.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.4e-255 887.1 2156 33.2
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 6.4e-248 862.4 1279 44.2
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.0e-246 855.9 2124 32.3
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 5.7e-196 689.9 1007 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 5.9e-193 679.9 1960 30.8
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-191 675.6 429 75.1
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.1e-170 604.4 652 56.3
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.7e-163 580.9 582 52.7
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.6e-161 575.5 1938 28.0
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-154 552.0 1630 30.2
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.0e-149 534.6 328 78.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 4.0e-149 534.3 546 53.7
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 4.4e-148 530.8 463 62.4
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.1e-106 390.6 782 36.6
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-103 382.9 518 46.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.4e-101 376.3 313 63.6
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.5e-95 356.3 347 53.3
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.1e-94 352.4 404 50.0
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.8e-92 344.4 286 64.7
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-89 336.7 215 75.3
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 4.3e-87 328.2 221 71.9
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.5e-84 319.7 242 69.8
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 6.7e-80 304.3 190 77.4
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-71 275.4 1096 27.5
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 4.3e-71 275.0 393 44.3
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.5e-68 265.0 163 78.5
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.9e-68 264.6 159 79.9
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 8.5e-67 260.8 162 77.2
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-61 243.4 297 48.5
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 2.5e-58 232.6 294 48.6
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.2e-57 230.3 248 55.6
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.0e-56 227.3 197 62.9
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 2.3e-56 226.1 258 50.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-55 223.8 426 40.1
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 4.4e-55 221.9 165 66.1
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.8e-46 192.6 125 69.6
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 4.5e-44 185.3 334 38.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.3e-40 172.9 124 75.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.0e-39 169.9 606 27.7
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 5.4e-37 161.8 368 33.2
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.0e-32 147.5 216 38.9
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.2e-32 145.2 126 62.7
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.0e-31 143.3 90 77.8
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 2.0e-28 133.3 411 29.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.8e-24 120.2 62 83.9
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-20 105.9 129 49.6
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-20 105.9 129 49.6
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 7.3e-18 98.2 109 54.1
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.1e-17 96.7 120 50.8
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.1e-17 96.7 116 48.3
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.8e-16 93.6 137 43.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 4.4e-15 89.0 68 60.3
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 8.3e-14 84.7 152 40.8
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.9e-13 83.6 162 36.4
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-13 83.6 135 43.7
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 4.1e-13 82.4 137 38.7
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.7e-12 79.7 66 56.1
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.9e-10 73.6 165 35.2
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.6e-09 69.3 107 38.3
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 4.7e-09 68.9 100 44.0
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-08 67.0 119 37.0
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 2.6e-07 63.2 91 45.1
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 2.2e-06 60.1 53 62.3
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 4.9e-06 58.9 79 35.4


User provided reference genes

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