Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 4124.7 2172 100.0
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2459.5 2186 62.6
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2454.9 2193 61.7
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2432.9 2218 61.1
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2430.2 2195 60.4
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2416.0 2197 59.7
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2379.4 2195 60.2
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2334.3 2207 58.6
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2309.3 2197 58.7
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2279.6 2230 57.6
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2278.8 2203 57.2
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2272.7 2193 57.2
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2270.0 2031 61.0
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2234.5 2193 57.3
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2233.8 2219 56.2
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2233.0 2198 58.1
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2220.7 2194 56.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2217.6 2199 57.2
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2215.7 2199 56.3
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2214.1 2189 57.4
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2202.6 2205 56.1
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 2195.2 2190 57.5
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2192.5 2193 56.3
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2192.2 2194 55.6
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2190.2 2224 54.9
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2188.7 2203 55.9
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2187.5 2195 56.4
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2180.2 2197 55.8
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2172.9 2218 55.7
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2168.3 2209 55.4
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2166.0 2215 55.6
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2148.2 2292 54.1
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2148.2 2192 55.6
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2143.2 2201 54.7
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2133.6 2204 55.2
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2114.7 2214 53.9
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2112.8 2203 54.7
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2109.3 2216 54.2
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2109.3 2214 54.4
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2109.0 2205 53.8
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2096.2 2203 54.4
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2095.1 2200 54.5
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 2093.2 2176 55.5
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2092.8 2199 53.8
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 2064.3 2138 54.3
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2052.3 2275 53.3
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2048.9 2221 53.2
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2035.0 1964 58.0
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 2025.8 2173 53.8
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1991.9 2199 52.6
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1984.5 2212 52.0
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1978.4 2114 52.8
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1961.4 2121 53.5
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1951.8 1911 57.6
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1946.0 1872 58.2
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1904.8 2033 54.0
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1897.5 2313 48.7
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1895.2 2200 51.0
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1875.9 2105 51.4
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1835.5 1892 54.7
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1828.9 1898 55.1
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1809.3 2010 52.6
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1799.6 1977 53.1
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1781.1 2189 49.7
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1778.5 2208 48.8
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1748.8 1687 57.3
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1735.3 2119 48.1
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1726.5 2158 47.7
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1711.0 2280 45.5
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1557.0 1678 53.5
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1526.5 2006 44.6
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1525.0 1556 54.2
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1443.7 1765 48.7
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1378.2 1807 44.4
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1325.5 1697 47.5
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1325.1 1707 47.5
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1313.1 1702 47.9
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1302.0 2303 38.4
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1275.4 1131 60.1
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1214.9 1569 47.2
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1178.3 2263 36.4
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1172.9 1968 38.9
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 1.2e-300 1037.7 1027 56.7
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.6e-287 994.2 973 56.5
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 1.5e-282 977.6 1035 53.0
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.4e-280 971.1 1149 48.9
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 1.4e-275 954.5 1360 43.5
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 2.1e-260 904.0 1137 48.2
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.0e-254 883.6 984 50.5
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 9.7e-245 852.0 1389 38.8
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.1e-216 758.8 884 49.8
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.0e-214 752.3 2446 28.7
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 5.0e-209 733.4 653 59.0
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.8e-207 727.6 519 71.9
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 4.1e-203 713.8 1494 33.9
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 8.3e-188 662.9 517 66.3
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.2e-157 562.8 425 69.9
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 3.0e-137 495.0 391 65.2
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.2e-111 409.1 370 59.7
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 4.5e-109 401.4 419 54.2
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.7e-108 399.4 419 54.7
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-105 389.8 342 62.3
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 6.8e-105 387.5 562 47.2
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.0e-104 386.0 216 85.2
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 2.2e-103 382.5 216 84.7
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.3e-97 362.5 361 57.9
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 2.3e-97 362.5 230 78.7
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 3.0e-89 335.5 183 86.9
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.2e-79 302.8 564 39.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 9.5e-67 260.8 366 47.8
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.2e-61 243.8 128 89.1
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 3.9e-60 238.8 383 46.0
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.6e-58 233.4 262 52.7
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 4.0e-57 228.8 310 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 3.8e-55 222.2 202 56.9
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 5.4e-54 218.4 148 73.0
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.6e-45 190.3 120 80.0
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.1e-45 189.9 120 80.0
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 6.0e-45 188.3 143 74.8
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 5.1e-44 185.3 209 59.8
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 2.5e-43 183.0 146 69.2
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 4.8e-42 178.7 146 69.9
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.5e-38 165.2 133 63.9
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.3e-34 154.1 73 94.5
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.3e-34 154.1 73 94.5
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.0e-31 144.4 335 39.4
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.1e-30 141.0 95 71.6
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.5e-29 136.0 64 95.3
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 7.4e-27 128.3 178 46.1
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 2.3e-20 106.7 85 62.4
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 5.1e-20 105.5 373 35.4
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.7e-20 105.1 162 45.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.3e-19 102.4 57 84.2
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 9.7e-19 101.3 79 67.1
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 1.4e-17 97.4 233 34.8
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 3.1e-17 96.3 53 84.9
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.0e-15 91.3 55 80.0
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 5.0e-15 89.0 65 64.6
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 3.3e-11 76.3 108 46.3
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 3.3e-11 76.3 55 70.9
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 7.4e-11 75.1 73 67.1
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 6.3e-10 72.0 49 79.6
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 6.3e-10 72.0 58 58.6
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.5e-07 61.6 53 56.6
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 1.9e-06 60.5 51 58.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.5e-06 60.1 55 50.9
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.5e-06 60.1 55 50.9


User provided reference genes

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