Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029488 Daucus carota HOM05D001087 ORTHO05D005406 4.3e-68 261.2 129 100.0
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 1.5e-39 166.4 89 91.0
DCAR_024188 Daucus carota HOM05D000352 ORTHO05D001293 3.8e-32 141.7 108 72.2
DCAR_010349 Daucus carota HOM05D001087 ORTHO05D005406 8.6e-32 140.6 69 98.6
DCAR_032217 Daucus carota HOM05D001087 ORTHO05D005406 1.5e-31 139.8 68 100.0
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 9.8e-28 127.1 81 71.6
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 2.8e-27 125.6 77 79.2
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 1.4e-26 123.2 95 65.3
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 2.4e-26 122.5 81 70.4
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 3.1e-26 122.1 81 70.4
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 3.1e-26 122.1 89 67.4
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 3.1e-26 122.1 89 67.4
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 4.1e-26 121.7 81 69.1
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 7.0e-26 120.9 95 64.2
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 7.0e-26 120.9 80 75.0
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 7.0e-26 120.9 80 72.5
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 1.6e-25 119.8 82 69.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 1.6e-25 119.8 89 65.2
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.6e-25 119.8 89 65.2
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.0e-25 119.4 80 71.2
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 2.7e-25 119.0 80 72.5
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 2.7e-25 119.0 94 64.9
Dinv00562 Davidia involucrata HOM05D001087 ORTHO05D005406 2.7e-25 119.0 94 67.0
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 4.5e-25 118.2 82 70.7
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 5.9e-25 117.9 80 72.5
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.3e-24 116.7 82 68.3
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 1.3e-24 116.7 77 74.0
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.7e-24 116.3 95 58.9
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.7e-24 116.3 77 74.0
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 2.3e-24 115.9 92 65.2
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.3e-24 115.9 89 64.0
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 2.9e-24 115.5 77 72.7
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 3.8e-24 115.2 98 60.2
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 5.0e-24 114.8 94 62.8
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 5.0e-24 114.8 73 75.3
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 6.6e-24 114.4 80 70.0
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 6.6e-24 114.4 77 71.4
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 8.6e-24 114.0 81 67.9
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.1e-23 113.6 80 68.8
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.1e-23 113.6 92 63.0
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.1e-23 113.6 80 68.8
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.5e-23 113.2 80 68.8
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.5e-23 113.2 80 68.8
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 1.9e-23 112.8 80 70.0
Lj7A620G42 Lonicera japonica HOM05D001087 ORTHO05D005406 2.5e-23 112.5 80 66.2
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 3.3e-23 112.1 94 59.6
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 9.5e-23 110.5 89 59.6
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.2e-22 110.2 92 62.0
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.6e-22 109.8 77 66.2
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.6e-22 109.8 77 70.1
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 1.6e-22 109.8 95 54.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 1.6e-22 109.8 77 67.5
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 2.1e-22 109.4 80 65.0
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 3.6e-22 108.6 81 65.4
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 4.7e-22 108.2 94 57.4
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 4.7e-22 108.2 77 66.2
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 4.7e-22 108.2 80 67.5
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 6.1e-22 107.8 94 57.4
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 8.0e-22 107.5 81 66.7
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 1.0e-21 107.1 80 66.2
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.0e-21 107.1 80 65.0
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 1.4e-21 106.7 77 63.6
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 2.3e-21 105.9 73 67.1
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 3.0e-21 105.5 98 58.2
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 5.2e-21 104.8 77 64.9
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 8.9e-21 104.0 75 61.3
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 1.2e-20 103.6 80 62.5
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 1.2e-20 103.6 94 56.4
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.5e-20 103.2 75 61.3
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 2.6e-20 102.4 94 56.4
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 3.4e-20 102.1 80 62.5
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 4.4e-20 101.7 80 62.5
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 4.4e-20 101.7 80 62.5
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 5.7e-20 101.3 80 61.2
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 7.5e-20 100.9 84 58.3
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 7.5e-20 100.9 77 63.6
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 7.5e-20 100.9 77 63.6
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 1.7e-19 99.8 76 61.8
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.8e-18 96.3 70 61.4
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 2.4e-18 95.9 70 61.4
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 3.2e-18 95.5 70 61.4
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 5.4e-18 94.7 70 61.4
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 7.0e-18 94.4 70 61.4
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 9.2e-18 94.0 85 52.9
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.6e-17 93.2 70 60.0
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 1.6e-17 93.2 81 56.8
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 4.6e-17 91.7 82 58.5
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 5.9e-17 91.3 70 60.0
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 5.9e-17 91.3 71 62.0
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 5.9e-17 91.3 71 62.0
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 5.9e-17 91.3 70 60.0
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 7.8e-17 90.9 71 60.6
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 1.7e-16 89.7 81 51.9
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 2.3e-16 89.4 76 56.6
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 3.3e-15 85.5 65 61.5
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.2e-14 83.6 81 50.6
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.2e-14 83.6 81 50.6
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 3.6e-14 82.0 81 50.6
Peaxi162Scf00281g00313 Petunia axillaris HOM05D001087 ORTHO05D005406 6.0e-09 64.7 100 45.0
Nitab4.5_0028800g0010 Nicotiana tabacum HOM05D001087 ORTHO05D005406 7.3e-07 57.8 45 55.6
Nitab4.5_0002901g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.6e-06 56.6 46 58.7
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 2.1e-06 56.2 53 54.7


User provided reference genes

Program Settings