Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029396 Daucus carota HOM05D002747 ORTHO05D003069 1.6e-113 412.9 225 100.0
Peaxi162Scf00047g00439 Petunia axillaris HOM05D002747 ORTHO05D003069 2.4e-21 106.7 242 34.3
PGSC0003DMG400026411 Solanum tuberosum HOM05D002747 ORTHO05D003069 1.7e-19 100.5 238 31.5
Sopen09g034920 Solanum pennellii HOM05D002747 ORTHO05D003069 3.8e-19 99.4 242 29.8
Solyc09g092040.3 Solanum lycopersicum HOM05D002747 ORTHO05D003069 5.0e-19 99.0 242 30.6
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 9.4e-18 94.7 236 32.6
Lj3C408G1 Lonicera japonica HOM05D002747 ORTHO05D003069 1.6e-12 77.4 148 38.5
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 3.5e-12 76.3 109 44.0
SGA_v2.0_scaffold128G34075 Striga asiatica HOM05D002747 ORTHO05D003069 5.9e-12 75.5 109 44.0
HanXRQChr10g0310071 Helianthus annuus HOM05D002747 ORTHO05D003069 7.7e-12 75.1 111 44.1
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 2.9e-11 73.2 132 40.9
Lj3C402G3 Lonicera japonica HOM05D002747 ORTHO05D003069 2.9e-11 73.2 121 40.5
Nitab4.5_0006210g0050 Nicotiana tabacum HOM05D002747 ORTHO05D003069 2.9e-11 73.2 190 33.2
Oeu055771.1 Olea europaea HOM05D002747 ORTHO05D003069 2.9e-11 73.2 109 42.2
Hma1.2p1_0187F.1_g082360 Hydrangea macrophylla HOM05D002747 ORTHO05D003069 5.0e-11 72.4 111 43.2
Lsat_1_v5_gn_1_72020 Lactuca sativa HOM05D002747 ORTHO05D002872 5.0e-11 72.4 141 39.0
MSTRG.21971 Avicennia marina HOM05D002747 ORTHO05D003069 6.5e-11 72.0 109 42.2
Dinv27226 Davidia involucrata HOM05D002747 ORTHO05D003069 6.5e-11 72.0 109 43.1
GSVIVG01020909001 Vitis vinifera HOM05D002747 ORTHO05D003069 8.5e-11 71.6 107 43.0
Actinidia39241 Actinidia chinensis HOM05D002747 ORTHO05D003069 1.1e-10 71.2 134 41.0
CAN.G1333.12 Capsicum annuum HOM05D002747 ORTHO05D003069 1.1e-10 71.2 217 29.0
Medtr8g085380 Medicago truncatula HOM05D002747 ORTHO05D003069 1.1e-10 71.2 109 42.2
SalBow3G3614 Salvia bowleyana HOM05D002747 ORTHO05D003069 1.1e-10 71.2 177 35.0
Lalb_Chr13g0294891 Lupinus albus HOM05D002747 ORTHO05D003069 1.5e-10 70.9 109 42.2
arahy.Tifrunner.gnm1.ann1.12L8KL Arachis hypogaea HOM05D002747 ORTHO05D003069 1.9e-10 70.5 109 42.2
arahy.Tifrunner.gnm1.ann1.AI5VH5 Arachis hypogaea HOM05D002747 ORTHO05D003069 1.9e-10 70.5 109 42.2
Atru.chr4.1669 Acer truncatum HOM05D002747 ORTHO05D003069 2.5e-10 70.1 109 42.2
Cc03_g07950 Coffea canephora HOM05D002747 ORTHO05D003069 3.2e-10 69.7 132 39.4
DCAR_024465 Daucus carota HOM05D002747 ORTHO05D003069 3.2e-10 69.7 119 42.0
Glyma.05G154200 Glycine max HOM05D002747 ORTHO05D003069 4.2e-10 69.3 109 41.3
MD04G1012000 Malus domestica HOM05D002747 ORTHO05D003069 4.2e-10 69.3 141 39.0
Nn1g07916 Nelumbo nucifera HOM05D002747 ORTHO05D003069 4.2e-10 69.3 107 42.1
Cpa.g.sc443.3 Carica papaya HOM05D002747 ORTHO05D003069 5.5e-10 68.9 121 39.7
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 5.5e-10 68.9 121 38.8
Gohir.D02G114300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.5e-10 68.9 109 40.4
Gorai.005G130000 Gossypium raimondii HOM05D002747 ORTHO05D003069 5.5e-10 68.9 109 40.4
Sp1g03690 Schrenkiella parvula HOM05D002747 ORTHO05D003069 5.5e-10 68.9 109 38.5
TPR.G11870 Trifolium pratense HOM05D002747 ORTHO05D003069 5.5e-10 68.9 109 41.3
CsaV3_2G011630 Cucumis sativus L. HOM05D002747 ORTHO05D003069 7.2e-10 68.6 121 39.7
Migut.N00399 Erythranthe guttata HOM05D002747 ORTHO05D003069 7.2e-10 68.6 172 35.5
Thhalv10007758m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 7.2e-10 68.6 109 38.5
Lalb_Chr12g0205501 Lupinus albus HOM05D002747 ORTHO05D003069 7.2e-10 68.6 109 40.4
Phvul.003G290800 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 7.2e-10 68.6 109 39.4
AL1G14570 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 9.4e-10 68.2 121 37.2
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 9.4e-10 68.2 121 39.7
RcHm_v2.0_Chr4g0414661 Rosa chinensis HOM05D002747 ORTHO05D003069 9.4e-10 68.2 121 39.7
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 1.2e-09 67.8 107 42.1
Ca_17967_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 1.2e-09 67.8 109 41.3
THA.LOC104826121 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 1.2e-09 67.8 121 38.0
BolC8t46958H Brassica oleracea HOM05D002747 ORTHO05D003069 1.6e-09 67.4 109 37.6
ClCG06G007890 Citrullus lanatus HOM05D002747 ORTHO05D003069 1.6e-09 67.4 121 38.8
MELO3C020440.2 Cucumis melo HOM05D002747 ORTHO05D003069 1.6e-09 67.4 121 38.8
THA.LOC104801025 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 1.6e-09 67.4 121 38.0
BraA08t35571Z Brassica rapa HOM05D002747 ORTHO05D003069 2.1e-09 67.0 109 37.6
FAN07G2519 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.1e-09 67.0 109 39.4
Lj4g0002017 Lotus japonicus HOM05D002747 ORTHO05D003069 2.1e-09 67.0 109 40.4
Peaxi162Scf00652g00122 Petunia axillaris HOM05D002747 ORTHO05D003069 2.1e-09 67.0 152 36.8
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.7e-09 66.6 109 39.4
FAN22G0083 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.7e-09 66.6 121 38.0
CSS0010384 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 3.6e-09 66.2 109 39.4
CSS0018864 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 3.6e-09 66.2 109 39.4
Carub.0001s0409 Capsella rubella HOM05D002747 ORTHO05D003069 3.6e-09 66.2 121 36.4
Zm00001eb181030 Zea mays HOM05D002747 ORTHO05D003069 3.6e-09 66.2 109 39.4
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 4.7e-09 65.9 151 37.1
HPP92_021423 Vanilla planifolia HOM05D002747 ORTHO05D003069 4.7e-09 65.9 109 40.4
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 6.1e-09 65.5 172 34.3
CDE05G0937 Ceratophyllum demersum HOM05D002747 ORTHO05D003069 6.1e-09 65.5 107 40.2
Manes.03G146600 Manihot esculenta HOM05D002747 ORTHO05D003069 6.1e-09 65.5 132 37.9
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 6.1e-09 65.5 148 37.2
CAN.G767.5 Capsicum annuum HOM05D002747 ORTHO05D003069 1.4e-08 64.3 157 36.9
CiPaw.01G120100 Carya illinoinensis HOM05D002747 ORTHO05D003069 1.4e-08 64.3 121 40.5
Ciclev10005062m.g Citrus clementina HOM05D002747 ORTHO05D003069 1.4e-08 64.3 147 37.4
SalBow6G2541 Salvia bowleyana HOM05D002747 ORTHO05D003069 1.4e-08 64.3 109 43.1
SalBow6G4014 Salvia bowleyana HOM05D002747 ORTHO05D003069 1.4e-08 64.3 109 43.1
SMO172G0136 Selaginella moellendorffii HOM05D002747 ORTHO05D003069 1.4e-08 64.3 109 40.4
Os02g0504500 Oryza sativa ssp. japonica HOM05D002747 ORTHO05D003069 1.8e-08 63.9 121 38.0
Aqoxy5G00020 Aquilegia oxysepala HOM05D002747 ORTHO05D003069 2.3e-08 63.5 107 39.3
AT1G04850 Arabidopsis thaliana HOM05D002747 ORTHO05D003069 2.3e-08 63.5 153 33.3
Cfa014907 Carpinus fangiana HOM05D002747 ORTHO05D003069 2.3e-08 63.5 139 38.1
Nitab4.5_0000850g0120 Nicotiana tabacum HOM05D002747 ORTHO05D003069 3.0e-08 63.2 151 35.1
Duzib268G0508 Durio zibethinus HOM05D002747 ORTHO05D003069 4.0e-08 62.8 132 36.4
BcaB03g13469 Brassica carinata HOM05D002747 ORTHO05D003069 5.2e-08 62.4 148 34.5
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 5.2e-08 62.4 130 35.4
Gohir.A03G094800 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.2e-08 62.4 109 39.4
Lsat_1_v5_gn_9_13141 Lactuca sativa HOM05D002747 ORTHO05D003069 5.2e-08 62.4 179 32.4
Nitab4.5_0000676g0100 Nicotiana tabacum HOM05D002747 ORTHO05D003069 5.2e-08 62.4 151 35.1
Solyc12g098420.3 Solanum lycopersicum HOM05D002747 ORTHO05D003069 5.2e-08 62.4 156 36.5
CARHR004240 Cardamine hirsuta HOM05D002747 ORTHO05D003069 6.7e-08 62.0 150 32.7
FvH4_4g13780 Fragaria vesca HOM05D002747 ORTHO05D003069 6.7e-08 62.0 156 36.5
QL06p025309 Quercus lobata HOM05D002747 ORTHO05D003069 6.7e-08 62.0 100 40.0
Atru.chr6.1415 Acer truncatum HOM05D002747 ORTHO05D003069 8.8e-08 61.6 109 37.6
Duzib151G1154 Durio zibethinus HOM05D002747 ORTHO05D003069 8.8e-08 61.6 132 35.6
MD13G1284100 Malus domestica HOM05D002747 ORTHO05D003069 8.8e-08 61.6 156 36.5
Prupe.1G010500 Prunus persica HOM05D002747 ORTHO05D003069 8.8e-08 61.6 153 35.3
Sed0019212 Sechium edule HOM05D002747 ORTHO05D003069 8.8e-08 61.6 156 35.9
Sopen12g033200 Solanum pennellii HOM05D002747 ORTHO05D003069 8.8e-08 61.6 156 36.5
PGSC0003DMG401004570 Solanum tuberosum HOM05D002747 ORTHO05D003069 8.8e-08 61.6 156 36.5
BcaB02g06896 Brassica carinata HOM05D002747 ORTHO05D003069 1.1e-07 61.2 148 33.8
A10p03300 Brassica napus HOM05D002747 ORTHO05D003069 1.1e-07 61.2 148 33.8
BolC5t29084H Brassica oleracea HOM05D002747 ORTHO05D003069 1.1e-07 61.2 148 33.8
BraA10t42604Z Brassica rapa HOM05D002747 ORTHO05D003069 1.1e-07 61.2 148 33.8
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 1.1e-07 61.2 141 36.2
BcaC05g24434 Brassica carinata HOM05D002747 ORTHO05D003069 1.5e-07 60.8 157 33.1
BcaC07g36875 Brassica carinata HOM05D002747 ORTHO05D003069 1.5e-07 60.8 148 33.8
C08p01530 Brassica napus HOM05D002747 ORTHO05D003069 1.5e-07 60.8 148 33.8
Mapoly0009s0066 Marchantia polymorpha HOM05D002747 ORTHO05D003069 1.5e-07 60.8 107 41.1
Thecc.04G200800 Theobroma cacao HOM05D002747 ORTHO05D003069 1.5e-07 60.8 132 34.1
A08p36680 Brassica napus HOM05D002747 ORTHO05D003069 2.0e-07 60.5 148 33.8
Glyma.08G112000 Glycine max HOM05D002747 ORTHO05D003069 2.0e-07 60.5 149 36.9
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 2.0e-07 60.5 153 35.9
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 2.0e-07 60.5 153 35.9
Sc25g0005830 Simmondsia chinensis HOM05D002747 ORTHO05D003069 2.0e-07 60.5 149 36.2
CSS0015960 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 2.6e-07 60.1 158 34.8
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 2.6e-07 60.1 178 34.3
CiPaw.04G104400 Carya illinoinensis HOM05D002747 ORTHO05D003069 3.3e-07 59.7 111 38.7
Ca_17966_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 3.3e-07 59.7 96 39.6
Ah.13g078100 Amaranthus hybridus HOM05D002747 ORTHO05D003069 4.4e-07 59.3 121 34.7
COL.COLO4_20167 Corchorus olitorius HOM05D002747 ORTHO05D003069 4.4e-07 59.3 153 33.3
PSO170G5398 Papaver somniferum HOM05D002747 ORTHO05D003069 7.5e-07 58.5 107 38.3
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 7.5e-07 58.5 107 38.3
Pp3c2_16680 Physcomitrium patens HOM05D002747 ORTHO05D003069 9.7e-07 58.2 109 36.7
Aa31LG1G19860 Aethionema arabicum HOM05D002747 ORTHO05D003069 1.3e-06 57.8 155 34.8
Cpa.g.sc8.133 Carica papaya HOM05D002747 ORTHO05D003069 1.3e-06 57.8 172 33.7
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 1.3e-06 57.8 109 33.9
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 1.3e-06 57.8 155 33.5
Manes.12G046400 Manihot esculenta HOM05D002747 ORTHO05D003069 1.3e-06 57.8 109 35.8
Hund24396 Selenicereus undatus HOM05D002747 ORTHO05D003069 1.3e-06 57.8 109 36.7
EL10Ac3g07480 Beta vulgaris HOM05D002747 ORTHO05D003069 1.7e-06 57.4 172 30.8
AUR62020830 Chenopodium quinoa HOM05D002747 ORTHO05D003069 1.7e-06 57.4 157 33.1
FAN27G3095 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.7e-06 57.4 132 34.8
TAR362G0277 Trochodendron aralioides HOM05D002747 ORTHO05D003069 1.7e-06 57.4 140 34.3
AUR62018589 Chenopodium quinoa HOM05D002747 ORTHO05D003069 2.2e-06 57.0 174 31.6
Potri.002G244500 Populus trichocarpa HOM05D002747 ORTHO05D003069 2.8e-06 56.6 109 37.6
MD05G1173000 Malus domestica HOM05D002747 ORTHO05D003069 3.7e-06 56.2 121 37.2
ATR0609G128 Amborella trichopoda HOM05D002747 ORTHO05D003069 6.3e-06 55.5 145 34.5
Actinidia23716 Actinidia chinensis HOM05D002747 ORTHO05D003069 8.2e-06 55.1 157 30.6
Carub.0008s0843 Capsella rubella HOM05D002747 ORTHO05D003069 8.2e-06 55.1 117 30.8
Oeu018496.2 Olea europaea HOM05D002747 ORTHO05D003069 8.2e-06 55.1 84 39.3
Oeu018497.1 Olea europaea HOM05D002747 ORTHO05D003069 8.2e-06 55.1 84 39.3
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 8.2e-06 55.1 157 34.4


User provided reference genes

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