Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 5.7e-155 550.8 270 100.0
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.4e-108 396.7 285 68.1
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 1.6e-104 383.3 268 70.5
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.0e-103 380.6 269 70.3
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.9e-102 376.3 266 69.5
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 2.5e-102 375.9 268 71.6
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 3.7e-101 372.1 275 68.7
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 4.8e-101 371.7 263 70.0
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 8.1e-101 370.9 271 69.4
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 9.0e-100 367.5 262 68.3
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.5e-99 366.7 269 69.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 5.8e-99 364.8 213 82.2
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.3e-98 363.6 219 77.2
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.3e-98 363.6 275 68.4
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 1.3e-98 363.6 270 68.5
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 2.2e-98 362.8 268 66.8
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 2.2e-98 362.8 268 67.5
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 2.9e-98 362.5 270 69.3
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 3.8e-98 362.1 266 70.3
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 4.9e-98 361.7 270 70.0
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 4.9e-98 361.7 266 66.9
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 6.5e-98 361.3 274 67.2
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 8.4e-98 360.9 265 70.2
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.9e-97 359.8 266 69.2
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 1.9e-97 359.8 214 79.9
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 3.2e-97 359.0 270 68.5
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 9.3e-97 357.5 272 65.8
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 9.3e-97 357.5 268 67.9
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 1.2e-96 357.1 266 66.5
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 4.6e-96 355.1 281 64.8
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 6.0e-96 354.8 266 65.4
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 1.3e-95 353.6 248 71.8
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 3.9e-95 352.1 269 66.9
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 3.9e-95 352.1 241 69.7
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 5.1e-95 351.7 270 67.8
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 5.1e-95 351.7 250 67.6
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 6.7e-95 351.3 215 78.6
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 8.7e-95 350.9 269 66.9
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 8.7e-95 350.9 243 71.6
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.5e-94 350.1 264 67.8
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.5e-94 349.4 269 66.9
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.5e-94 349.4 269 66.5
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 3.3e-94 349.0 245 69.8
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 7.4e-94 347.8 267 66.3
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 7.4e-94 347.8 259 66.8
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-93 347.1 213 78.4
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.3e-93 347.1 275 65.8
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.6e-93 346.7 270 65.6
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.6e-93 346.7 297 61.6
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.8e-92 343.2 243 68.7
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 2.4e-92 342.8 239 69.5
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 4.1e-92 342.0 267 65.2
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 4.1e-92 342.0 223 74.0
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 4.1e-92 342.0 222 73.0
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 5.3e-92 341.7 274 64.2
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 6.9e-92 341.3 255 66.7
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 6.9e-92 341.3 255 66.7
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 6.9e-92 341.3 243 67.9
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 9.0e-92 340.9 218 74.8
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 1.2e-91 340.5 258 67.1
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.5e-91 340.1 275 65.5
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 2.6e-91 339.3 255 66.7
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 2.6e-91 339.3 256 66.0
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 2.6e-91 339.3 256 66.0
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 7.6e-91 337.8 280 62.5
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 3.8e-90 335.5 222 72.1
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.9e-89 333.2 255 65.1
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 2.7e-88 329.3 263 64.3
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 6.1e-88 328.2 217 71.9
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 7.9e-88 327.8 269 60.2
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.3e-87 326.2 248 66.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 7.4e-86 321.2 177 84.7
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.1e-84 317.4 248 65.7
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.8e-84 316.6 226 69.5
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 3.4e-83 312.4 254 62.2
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 7.7e-83 311.2 220 68.2
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.7e-82 310.1 271 59.8
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.2e-82 309.7 270 61.9
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.2e-82 309.7 212 68.9
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.2e-82 309.7 210 69.0
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 4.2e-81 305.4 223 66.4
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 5.5e-81 305.1 171 83.0
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.7e-80 302.8 266 58.6
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 3.6e-80 302.4 278 57.9
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 5.1e-79 298.5 168 80.4
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 6.7e-79 298.1 316 54.1
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.5e-78 297.0 254 58.3
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 5.7e-78 295.0 278 59.0
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.7e-77 293.5 254 62.2
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 2.4e-76 289.7 268 56.0
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 5.9e-75 285.0 240 64.2
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 7.7e-75 284.6 201 70.6
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 5.5e-73 278.5 223 61.4
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 4.7e-72 275.4 351 47.9
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 8.2e-69 264.6 194 68.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 9.1e-68 261.2 192 66.1
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 4.5e-67 258.8 192 64.1
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 4.5e-67 258.8 202 67.3
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 8.5e-66 254.6 173 72.8
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.1e-62 244.2 186 61.3
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 3.3e-62 242.7 169 71.6
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 3.2e-57 226.1 265 52.8
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.7e-56 222.2 184 64.1
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 8.0e-56 221.5 141 75.9
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 1.0e-55 221.1 205 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 4.4e-54 215.7 197 55.8
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.2e-53 213.4 179 57.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 3.5e-51 206.1 117 82.1
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.7e-48 196.4 179 50.3
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 8.0e-40 168.3 250 40.0
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 1.4e-39 167.5 180 47.2
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.4e-36 157.5 81 88.9
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.0e-36 155.2 81 88.9
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.5e-33 147.5 76 89.5
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.4e-31 141.0 117 59.8
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 2.9e-29 133.3 69 87.0
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 4.6e-27 125.9 186 38.2
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.3e-26 124.4 116 43.1
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.1e-24 117.1 58 91.4
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 4.7e-24 115.9 169 46.2
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 1.7e-18 97.4 124 46.0
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.1e-17 94.7 51 86.3
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 4.7e-16 89.4 45 86.7
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 4.7e-16 89.4 115 48.7
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 6.2e-16 89.0 58 72.4
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 7.6e-14 82.0 44 79.5
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 6.0e-11 72.4 64 54.7


User provided reference genes

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