Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 8.6e-176 620.2 302 100.0
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 1.1e-151 540.0 303 91.1
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.7e-123 446.4 295 78.3
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.7e-123 446.4 295 78.3
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 2.9e-123 445.7 295 78.6
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 5.0e-123 444.9 296 76.7
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 6.5e-123 444.5 295 77.6
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 8.5e-123 444.1 295 78.3
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 2.5e-122 442.6 319 73.0
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 3.2e-122 442.2 295 78.0
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 3.2e-122 442.2 295 77.6
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 7.2e-122 441.0 295 76.9
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 9.4e-122 440.7 295 78.0
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 9.4e-122 440.7 295 78.0
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.6e-121 439.9 295 76.6
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.6e-121 438.7 295 76.6
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 6.1e-121 438.0 330 69.4
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 1.4e-120 436.8 295 76.6
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 5.1e-120 434.9 294 76.9
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 5.1e-120 434.9 295 75.9
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.7e-120 434.5 294 75.9
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.7e-120 434.5 294 75.9
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 8.8e-120 434.1 295 75.6
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 8.8e-120 434.1 297 75.1
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.5e-119 433.3 295 75.9
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 2.0e-119 433.0 295 76.6
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 2.0e-119 433.0 295 76.3
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 3.3e-119 432.2 307 73.0
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 4.3e-119 431.8 295 75.9
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.3e-119 431.8 295 75.9
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 5.7e-119 431.4 295 75.6
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 1.7e-118 429.9 295 74.2
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.7e-118 429.9 295 74.2
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 1.7e-118 429.9 295 75.6
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 2.2e-118 429.5 295 75.6
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.8e-118 428.3 295 75.9
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.8e-118 428.3 295 73.9
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 6.3e-118 427.9 295 75.3
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 6.3e-118 427.9 295 75.3
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 8.2e-118 427.6 295 75.6
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 1.1e-117 427.2 295 74.6
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 1.1e-117 427.2 295 74.6
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.1e-117 427.2 295 75.3
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.4e-117 426.8 295 75.6
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 1.4e-117 426.8 295 73.9
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.4e-117 426.8 300 73.3
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.8e-117 426.4 295 74.9
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.4e-117 426.0 295 73.6
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.1e-117 425.6 295 73.9
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 4.1e-117 425.2 295 74.9
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 5.3e-117 424.9 295 74.9
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 6.9e-117 424.5 295 73.6
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.9e-117 424.5 295 73.9
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 6.9e-117 424.5 295 73.9
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 9.1e-117 424.1 295 73.2
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.5e-116 423.3 295 73.9
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.6e-116 422.5 295 73.6
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.7e-116 421.0 299 71.9
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 1.3e-115 420.2 295 73.6
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.7e-115 419.9 295 74.6
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.7e-115 419.9 295 74.6
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 2.2e-115 419.5 295 73.9
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 5.0e-115 418.3 295 74.6
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 8.5e-115 417.5 294 73.5
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 8.5e-115 417.5 295 72.5
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 1.1e-114 417.2 295 73.2
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.4e-114 416.8 295 73.2
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 3.2e-114 415.6 295 74.6
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 5.5e-114 414.8 295 72.5
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 5.5e-114 414.8 295 72.5
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 5.5e-114 414.8 295 72.5
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 5.5e-114 414.8 295 72.5
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 5.5e-114 414.8 295 74.2
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 7.2e-114 414.5 295 72.2
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 7.2e-114 414.5 295 72.5
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 7.2e-114 414.5 295 72.5
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 9.4e-114 414.1 295 74.2
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 72.5
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 1.2e-113 413.7 295 73.6
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.6e-113 413.3 295 74.2
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 2.1e-113 412.9 295 72.2
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 3.6e-113 412.1 316 69.0
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 4.7e-113 411.8 295 73.9
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 7.9e-113 411.0 295 72.5
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 7.9e-113 411.0 295 73.6
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 5.1e-112 408.3 295 73.6
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 5.1e-112 408.3 295 73.6
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 8.8e-112 407.5 295 71.5
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 3.3e-111 405.6 295 71.9
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 1.1e-109 400.6 295 70.2
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 9.1e-109 397.5 334 65.6
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 9.1e-109 397.5 295 69.2
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.0e-107 394.0 295 68.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 5.0e-107 391.7 362 60.5
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.5e-106 390.2 295 67.8
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 3.0e-104 382.5 449 51.0
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 6.7e-104 381.3 265 74.7
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.0e-100 369.8 295 64.1
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 1.7e-99 366.7 294 68.7
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.8e-96 354.8 297 62.6
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 6.8e-96 354.8 297 62.6
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.1e-93 345.9 296 61.1
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.9e-90 336.7 295 60.7
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.0e-84 316.6 300 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 2.3e-83 313.2 294 54.1
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.0e-83 312.0 300 58.7
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.1e-82 310.8 295 58.3
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 2.1e-81 306.6 189 81.5
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 2.3e-80 303.1 294 53.1
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 4.0e-80 302.4 296 54.7
Cpa.g.sc17.19 Carica papaya HOM05D003313 ORTHO05D004217 7.0e-77 291.6 194 75.8
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 5.9e-76 288.5 205 73.2
vmacro01642 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.1e-72 276.2 239 61.5
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 6.4e-70 268.5 297 49.8
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 2.7e-68 263.1 293 48.1
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 3.6e-65 252.7 332 47.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.4e-64 250.8 300 51.3
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.9e-61 240.4 294 48.3
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 7.8e-44 181.8 123 75.6
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 7.8e-44 181.8 123 75.6
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 5.3e-40 169.1 91 90.1
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.8e-38 162.9 91 86.8
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 8.4e-38 161.8 91 85.7
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 1.1e-37 161.4 108 74.1
vmacro01643 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.0e-35 154.8 109 75.2
MD10G1149000 Malus domestica HOM05D003313 ORTHO05D004217 2.4e-32 143.7 74 87.8
Nitab4.5_0004668g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 6.9e-32 142.1 85 77.6
HanXRQChr14g0448821 Helianthus annuus HOM05D003313 ORTHO05D004217 9.0e-32 141.7 74 87.8
SHI06534 Sapria himalayana HOM05D003313 ORTHO05D004217 2.2e-30 137.1 99 68.7
SHI06540 Sapria himalayana HOM05D003313 ORTHO05D004217 2.9e-30 136.7 73 84.9
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.3e-27 127.1 94 67.0
Glyma.18G148901 Glycine max HOM05D003313 ORTHO05D004217 8.7e-27 125.2 77 77.9
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 4.3e-26 122.9 138 49.3
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 8.1e-25 118.6 290 28.3
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 1.6e-20 104.4 306 26.8
QL09p014688 Quercus lobata HOM05D000257 ORTHO05D009129 2.1e-17 94.0 85 57.6
SHI06533 Sapria himalayana HOM05D003313 ORTHO05D004217 4.1e-16 89.7 58 74.1
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 8.2e-09 65.5 34 88.2
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 9.0e-08 62.0 33 87.9
VMungo0720G1425 Vigna mungo HOM05D003313 ORTHO05D004217 2.6e-07 60.5 37 73.0
SMO334G0084 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.3e-06 58.2 98 37.8
SHI06532 Sapria himalayana HOM05D003313 ORTHO05D004217 5.0e-06 56.2 33 78.8


User provided reference genes

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