Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.4e-259 898.3 447 100.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.8e-207 725.3 450 81.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 3.2e-203 711.8 442 81.7
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 7.2e-203 710.7 449 80.2
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 9.4e-203 710.3 445 80.7
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.4e-201 706.4 442 80.1
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.4e-201 706.4 450 79.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.8e-201 706.1 442 80.8
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 3.0e-201 705.3 442 80.8
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.7e-201 704.1 442 80.8
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-200 703.0 442 80.5
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 7.4e-200 700.7 453 77.5
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.3e-199 699.9 442 79.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.3e-199 699.9 452 77.7
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 3.7e-199 698.4 446 79.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 6.3e-199 697.6 443 78.8
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 8.2e-199 697.2 452 77.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 3.1e-198 695.3 450 78.0
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.1e-198 695.3 449 78.4
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.1e-198 695.3 459 76.0
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.5e-197 693.0 440 78.2
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.0e-197 692.6 446 77.6
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.6e-197 692.2 452 77.2
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.6e-197 692.2 448 76.8
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.4e-197 691.8 452 77.2
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 4.5e-197 691.4 452 76.1
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.9e-197 691.0 425 80.2
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.9e-197 691.0 447 77.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 5.9e-197 691.0 444 78.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.7e-197 690.6 445 77.1
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-196 688.7 446 76.7
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.9e-196 688.7 447 77.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 3.8e-196 688.3 447 77.6
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 6.5e-196 687.6 431 79.1
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.9e-195 686.0 452 76.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.9e-195 686.0 445 76.9
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.9e-195 686.0 440 77.0
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.5e-195 685.6 444 77.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.2e-195 685.3 447 78.3
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 5.5e-195 684.5 447 76.5
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.2e-195 684.1 452 75.7
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 9.4e-195 683.7 445 78.0
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.7e-194 682.2 449 76.4
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 3.6e-194 681.8 445 77.5
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.7e-194 681.4 447 77.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 6.1e-194 681.0 449 76.2
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 6.1e-194 681.0 447 75.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 8.0e-194 680.6 428 79.0
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.0e-193 680.2 450 76.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.0e-193 680.2 449 76.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.4e-193 679.9 445 77.3
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 2.3e-193 679.1 444 76.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.9e-193 678.3 441 76.9
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.9e-193 678.3 441 76.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 6.7e-193 677.6 450 76.9
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 6.7e-193 677.6 449 75.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 8.8e-193 677.2 449 75.9
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 8.8e-193 677.2 449 75.9
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.0e-192 676.0 455 73.6
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.0e-192 676.0 445 76.4
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 2.6e-192 675.6 442 77.1
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 3.3e-192 675.2 449 75.9
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.2e-191 672.5 419 79.7
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.8e-191 672.2 450 76.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 6.3e-191 671.0 448 76.1
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 8.2e-191 670.6 450 74.7
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 8.2e-191 670.6 423 78.3
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.1e-190 668.7 445 76.2
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.2e-189 666.8 453 74.0
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.0e-189 666.0 450 75.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.7e-189 664.1 424 77.6
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-188 662.9 419 79.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.9e-188 662.1 459 73.2
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 8.5e-188 660.6 448 74.6
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.9e-187 659.4 455 73.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-186 655.6 449 73.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 8.0e-186 654.1 440 73.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 4.4e-184 648.3 430 74.7
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.3e-183 646.7 451 74.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-183 646.4 430 73.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.8e-183 644.8 430 73.5
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.3e-183 644.4 453 73.3
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 8.2e-183 644.0 432 72.7
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.3e-182 641.3 428 73.8
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 7.0e-182 641.0 446 73.3
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.7e-180 636.3 442 74.2
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.2e-180 636.0 445 73.5
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 2.9e-180 635.6 452 72.1
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.5e-180 634.4 447 72.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.5e-179 632.5 471 69.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.2e-179 631.7 442 71.9
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 4.2e-179 631.7 459 71.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 7.2e-179 630.9 369 82.9
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 9.4e-179 630.6 441 74.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 2.1e-178 629.4 467 71.7
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 3.6e-178 628.6 444 71.4
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 3.6e-178 628.6 460 72.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 6.1e-178 627.9 450 71.6
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.8e-177 626.3 463 70.8
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.0e-176 622.9 567 60.0
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.3e-175 620.2 445 71.0
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.7e-175 619.8 449 71.0
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 4.8e-175 618.2 471 67.5
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 6.3e-175 617.8 440 69.3
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.4e-174 616.7 460 69.6
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.1e-174 615.5 416 72.4
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.2e-173 613.6 468 67.1
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 2.0e-173 612.8 416 72.1
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-171 607.1 424 73.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.3e-171 605.5 422 70.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.2e-171 605.1 416 71.2
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.8e-169 597.8 426 68.8
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 5.7e-168 594.7 422 70.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 3.5e-165 585.5 463 64.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 8.6e-164 580.9 415 70.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.9e-163 579.7 412 70.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.1e-158 563.9 365 77.8
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 5.4e-158 561.6 453 65.8
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 7.8e-157 557.8 407 67.6
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-155 553.9 428 66.1
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.2e-152 543.9 331 81.3
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.8e-149 531.2 396 69.2
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 2.5e-147 526.2 431 61.0
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.1e-145 520.8 341 73.9
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.3e-145 519.6 337 75.4
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.6e-138 495.7 428 62.9
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 8.9e-137 491.1 431 60.6
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.2e-135 486.5 431 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 4.9e-135 485.3 445 56.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.9e-134 483.4 414 60.4
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.8e-133 478.0 329 70.5
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-125 454.1 320 69.4
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.6e-117 425.6 427 54.3
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 6.7e-108 395.2 287 67.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.1e-101 372.1 314 63.1
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.1e-93 347.1 252 67.5
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 9.7e-91 338.2 173 99.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 3.0e-84 316.6 244 66.4
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.2e-82 310.5 212 75.5
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.0e-79 301.6 425 43.3
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-78 298.1 209 72.7
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.8e-68 262.3 197 67.0
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.9e-54 217.6 154 73.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 3.3e-46 190.3 134 73.9
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.6e-37 160.2 207 45.4
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 8.3e-34 149.1 150 51.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 2.3e-31 141.0 149 52.3
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 7.3e-22 109.4 61 88.5
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.4e-12 77.8 56 64.3


User provided reference genes

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