Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029251 Daucus carota HOM05D002729 ORTHO05D022490 7.2e-45 184.1 137 100.0
Haze_02479 Corylus avellana HOM05D002729 ORTHO05D003163 5.7e-26 121.3 110 92.7
Sabra04G0141700 Salix brachista HOM05D002729 ORTHO05D003163 2.2e-25 119.4 111 91.0
Cpa.g.sc63.43 Carica papaya HOM05D002729 ORTHO05D003163 1.1e-24 117.1 109 90.8
Actinidia32002 Actinidia chinensis HOM05D002729 ORTHO05D003163 1.4e-24 116.7 127 53.5
Rhsim05G0044300 Rhododendron simsii HOM05D002729 ORTHO05D003163 7.2e-21 104.4 140 51.4
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 1.2e-18 97.1 101 76.2
Sc18g0004140 Simmondsia chinensis HOM05D002729 ORTHO05D003163 2.6e-18 95.9 125 75.2
BcaNung03629 Brassica carinata HOM05D002729 ORTHO05D003163 1.8e-16 89.7 106 50.0
GSVIVG01023835001 Vitis vinifera HOM05D002729 ORTHO05D003163 2.7e-15 85.9 132 70.5
Carub.0002s0843 Capsella rubella HOM05D030639 ORTHO05D024754 8.5e-14 80.9 108 47.2
Peaxi162Scf00152g01334 Petunia axillaris HOM05D030639 ORTHO05D022490 1.2e-12 77.0 41 87.8
Phvul.005G006400 Phaseolus vulgaris HOM05D002729 ORTHO05D003163 1.2e-12 77.0 127 69.3
AUR62021812 Chenopodium quinoa HOM05D002729 ORTHO05D003163 3.6e-12 75.5 111 75.7
arahy.Tifrunner.gnm1.ann1.24ZDA8 Arachis hypogaea HOM05D002729 ORTHO05D003163 4.7e-12 75.1 110 75.5
arahy.Tifrunner.gnm1.ann1.AX1616 Arachis hypogaea HOM05D002729 ORTHO05D003163 4.7e-12 75.1 110 75.5
EL10Ac8g20265 Beta vulgaris HOM05D002729 ORTHO05D003163 4.7e-12 75.1 127 66.9
Sc18g0004160 Simmondsia chinensis HOM05D002729 ORTHO05D003163 4.7e-12 75.1 125 69.6
AUR62012848 Chenopodium quinoa HOM05D002729 ORTHO05D003163 6.1e-12 74.7 111 75.7
Hund23013 Selenicereus undatus HOM05D002729 ORTHO05D003163 6.1e-12 74.7 127 67.7
Lalb_Chr15g0079831 Lupinus albus HOM05D002729 ORTHO05D024754 8.0e-12 74.3 106 43.4
Lj3g0011769 Lotus japonicus HOM05D002729 ORTHO05D003163 2.3e-11 72.8 111 74.8
CiPaw.06G112500 Carya illinoinensis HOM05D002729 ORTHO05D003163 3.0e-11 72.4 127 66.9
FvH4_2g17270 Fragaria vesca HOM05D002729 ORTHO05D003163 3.0e-11 72.4 111 74.8
FAN15G2193 Fragaria x ananassa HOM05D002729 ORTHO05D003163 3.0e-11 72.4 111 74.8
FAN27G2173 Fragaria x ananassa HOM05D002729 ORTHO05D003163 3.0e-11 72.4 111 74.8
Zm00001eb318200 Zea mays HOM05D002729 ORTHO05D003163 3.0e-11 72.4 111 73.0
Lj8C51G14 Lonicera japonica HOM05D002729 ORTHO05D022490 4.0e-11 72.0 100 74.0
Hund22926 Selenicereus undatus HOM05D002729 ORTHO05D003163 4.0e-11 72.0 63 57.1
FAN27G0632 Fragaria x ananassa HOM05D002729 ORTHO05D003163 6.8e-11 71.2 111 74.8
MD05G1151600 Malus domestica HOM05D002729 ORTHO05D003163 6.8e-11 71.2 111 74.8
Manes.15G112400 Manihot esculenta HOM05D002729 ORTHO05D003163 6.8e-11 71.2 111 74.8
CSS0032421 Camellia sinensis var. sinensis HOM05D002729 ORTHO05D003163 8.8e-11 70.9 127 66.9
CANSAT25G1626 Cannabis sativa HOM05D002729 ORTHO05D003163 8.8e-11 70.9 127 66.1
Manes.15G112200 Manihot esculenta HOM05D002729 ORTHO05D003163 8.8e-11 70.9 111 74.8
Medtr3g009280 Medicago truncatula HOM05D002729 ORTHO05D003163 8.8e-11 70.9 127 66.1
RcHm_v2.0_Chr6g0281771 Rosa chinensis HOM05D002729 ORTHO05D003163 1.2e-10 70.5 111 73.9
TPR.G16696 Trifolium pratense HOM05D002729 ORTHO05D003163 1.2e-10 70.5 111 73.9
CSS0015863 Camellia sinensis var. sinensis HOM05D002729 ORTHO05D003163 2.0e-10 69.7 127 65.4
Prupe.8G184200 Prunus persica HOM05D002729 ORTHO05D003163 2.0e-10 69.7 127 66.1
ATR0796G047 Amborella trichopoda HOM05D002729 ORTHO05D003163 2.6e-10 69.3 111 73.9
CDE06G1931 Ceratophyllum demersum HOM05D002729 ORTHO05D003163 3.4e-10 68.9 111 73.0
Ca_14122_v3 Cicer arietinum L. HOM05D002729 ORTHO05D003163 3.4e-10 68.9 111 73.0
CiPaw.05G096200 Carya illinoinensis HOM05D002729 ORTHO05D003163 4.4e-10 68.6 127 66.1
Psat5g231000 Pisum sativum HOM05D002729 ORTHO05D003163 4.4e-10 68.6 127 65.4
QL11p057171 Quercus lobata HOM05D002729 ORTHO05D003163 4.4e-10 68.6 126 65.9
QL11p057597 Quercus lobata HOM05D002729 ORTHO05D003163 4.4e-10 68.6 126 65.9
Lalb_Chr18g0048741 Lupinus albus HOM05D002729 ORTHO05D003163 5.7e-10 68.2 127 66.1
Os08g0539600 Oryza sativa ssp. japonica HOM05D002729 ORTHO05D003163 7.5e-10 67.8 111 73.0
CDE07G1191 Ceratophyllum demersum HOM05D002729 ORTHO05D003163 1.3e-09 67.0 127 65.4
PGR142G1892 Punica granatum HOM05D002729 ORTHO05D003163 1.3e-09 67.0 111 73.0
Psat2g171960 Pisum sativum HOM05D002729 ORTHO05D003163 1.7e-09 66.6 59 59.3
DCAR_029252 Daucus carota HOM05D002729 ORTHO05D003163 2.2e-09 66.2 33 100.0
Sabra04G0141800 Salix brachista HOM05D002729 ORTHO05D003163 2.2e-09 66.2 111 73.0
Glyma.06G320200 Glycine max HOM05D002729 ORTHO05D003163 2.8e-09 65.9 127 65.4
Lalb_Chr15g0079841 Lupinus albus HOM05D002729 ORTHO05D003163 2.8e-09 65.9 48 66.7
Duzib248G0051 Durio zibethinus HOM05D002729 ORTHO05D003163 3.7e-09 65.5 111 73.0
Lalb_Chr04g0264261 Lupinus albus HOM05D002729 ORTHO05D003163 3.7e-09 65.5 127 64.6
Actinidia26322 Actinidia chinensis HOM05D002729 ORTHO05D003163 6.3e-09 64.7 127 64.6
Glyma.04G116500 Glycine max HOM05D002729 ORTHO05D003163 6.3e-09 64.7 127 64.6
VMungo1080G1192 Vigna mungo HOM05D002729 ORTHO05D003163 8.3e-09 64.3 127 64.6
MD10G1145800 Malus domestica HOM05D002729 ORTHO05D003163 1.1e-08 63.9 48 66.7
Hund22927 Selenicereus undatus HOM05D002729 ORTHO05D003163 1.1e-08 63.9 33 84.8
Atru.chr8.1048 Acer truncatum HOM05D002729 ORTHO05D003163 1.4e-08 63.5 127 62.2
Duzib132G1137 Durio zibethinus HOM05D002729 ORTHO05D003163 1.8e-08 63.2 33 93.9
Lj9C306G15 Lonicera japonica HOM05D002729 ORTHO05D003163 1.8e-08 63.2 127 64.6
Thecc.02G150200 Theobroma cacao HOM05D002729 ORTHO05D003163 1.8e-08 63.2 33 93.9
Zm00001eb198300 Zea mays HOM05D002729 ORTHO05D003163 1.8e-08 63.2 111 71.2
CAN.G1577.22 Capsicum annuum HOM05D002729 ORTHO05D003163 2.4e-08 62.8 33 90.9
PGR042G1728 Punica granatum HOM05D002729 ORTHO05D003163 2.4e-08 62.8 111 71.2
Solyc01g104170.3 Solanum lycopersicum HOM05D002729 ORTHO05D003163 2.4e-08 62.8 33 90.9
Sopen01g046610 Solanum pennellii HOM05D002729 ORTHO05D003163 2.4e-08 62.8 33 90.9
PGSC0003DMG401023760 Solanum tuberosum HOM05D002729 ORTHO05D003163 2.4e-08 62.8 33 90.9
TAR623G1398 Trochodendron aralioides HOM05D002729 ORTHO05D003163 2.4e-08 62.8 127 63.8
Lj5A252T46 Lonicera japonica HOM05D002729 ORTHO05D003163 3.1e-08 62.4 127 63.8
ECA234G3511 Erigeron canadensis HOM05D002729 ORTHO05D003163 4.1e-08 62.0 33 90.9
HanXRQChr10g0290681 Helianthus annuus HOM05D002729 ORTHO05D003163 4.1e-08 62.0 33 90.9
Lsat_1_v5_gn_5_109261 Lactuca sativa HOM05D002729 ORTHO05D003163 4.1e-08 62.0 33 90.9
Lsat_1_v5_gn_9_118940 Lactuca sativa HOM05D002729 ORTHO05D003163 4.1e-08 62.0 33 90.9
Nn3g16166 Nelumbo nucifera HOM05D002729 ORTHO05D003163 4.1e-08 62.0 32 93.8
ClCG02G010650 Citrullus lanatus HOM05D002729 ORTHO05D003163 5.4e-08 61.6 111 70.3
DCAR_001821 Daucus carota HOM05D002729 ORTHO05D003163 5.4e-08 61.6 33 87.9
Eucgr.H01461 Eucalyptus grandis HOM05D002729 ORTHO05D003163 5.4e-08 61.6 33 90.9
Os09g0513000 Oryza sativa ssp. japonica HOM05D002729 ORTHO05D003163 5.4e-08 61.6 111 69.4
CARHR107550 Cardamine hirsuta HOM05D002729 ORTHO05D003163 9.1e-08 60.8 33 90.9
ClCG02G003120 Citrullus lanatus HOM05D002729 ORTHO05D003163 9.1e-08 60.8 33 90.9
THA.LOC104807416 Tarenaya hassleriana HOM05D002729 ORTHO05D003163 9.1e-08 60.8 33 87.9
CsaV3_6G009840 Cucumis sativus L. HOM05D002729 ORTHO05D003163 1.2e-07 60.5 33 87.9
Sed0015707 Sechium edule HOM05D002729 ORTHO05D003163 1.2e-07 60.5 33 87.9
Actinidia38844 Actinidia chinensis HOM05D002729 ORTHO05D003163 1.6e-07 60.1 111 70.3
HanXRQChr09g0246081 Helianthus annuus HOM05D002729 ORTHO05D003163 1.6e-07 60.1 33 87.9
HanXRQChr16g0513931 Helianthus annuus HOM05D002729 ORTHO05D003163 1.6e-07 60.1 33 87.9
Nitab4.5_0005103g0030 Nicotiana tabacum HOM05D002729 ORTHO05D003163 1.6e-07 60.1 32 90.6
Hund04402 Selenicereus undatus HOM05D002729 ORTHO05D003163 1.6e-07 60.1 32 90.6
TAR625G0581 Trochodendron aralioides HOM05D002729 ORTHO05D003163 1.6e-07 60.1 127 63.0
Gohir.A13G063600 Gossypium hirsutum HOM05D002729 ORTHO05D003163 2.0e-07 59.7 32 90.6
Gohir.D13G058300 Gossypium hirsutum HOM05D002729 ORTHO05D003163 2.0e-07 59.7 32 90.6
Gorai.013G065700 Gossypium raimondii HOM05D002729 ORTHO05D003163 2.0e-07 59.7 32 90.6
Hma1.2p1_0271F.1_g108610 Hydrangea macrophylla HOM05D002729 ORTHO05D003163 2.0e-07 59.7 31 90.3
PSO017G4879 Papaver somniferum HOM05D002729 ORTHO05D003163 2.0e-07 59.7 32 87.5
PSO478G5186 Papaver somniferum HOM05D002729 ORTHO05D003163 2.0e-07 59.7 32 87.5
PSO724G0249 Papaver somniferum HOM05D030639 ORTHO05D022490 2.0e-07 59.7 107 70.1
Hund04400 Selenicereus undatus HOM05D002729 ORTHO05D003163 2.0e-07 59.7 33 87.9
ECA240G4174 Erigeron canadensis HOM05D002729 ORTHO05D003163 2.7e-07 59.3 30 93.3
MELO3C024173.2 Cucumis melo HOM05D002729 ORTHO05D003163 3.5e-07 58.9 32 90.6
CsaV3_7G002290 Cucumis sativus L. HOM05D002729 ORTHO05D003163 3.5e-07 58.9 32 90.6
Nitab4.5_0000816g0020 Nicotiana tabacum HOM05D002729 ORTHO05D003163 3.5e-07 58.9 31 90.3
Cc02_g22490 Coffea canephora HOM05D002729 ORTHO05D003163 4.5e-07 58.5 31 90.3
Duzib052G0449 Durio zibethinus HOM05D002729 ORTHO05D003163 4.5e-07 58.5 111 70.3
HanXRQChr03g0071741 Helianthus annuus HOM05D002729 ORTHO05D003163 4.5e-07 58.5 32 87.5
Sed0002453 Sechium edule HOM05D002729 ORTHO05D003163 4.5e-07 58.5 33 84.8
Aqoxy3G01891 Aquilegia oxysepala HOM05D002729 ORTHO05D003163 5.9e-07 58.2 46 65.2
Solyc10g024340.2 Solanum lycopersicum HOM05D002729 ORTHO05D024754 5.9e-07 58.2 81 55.6
Zm00001eb064650 Zea mays HOM05D002729 ORTHO05D003163 7.7e-07 57.8 127 61.4
vmacro10879 Vaccinium macrocarpon HOM05D002729 ORTHO05D003163 1.0e-06 57.4 33 81.8
Nitab4.5_0001706g0040 Nicotiana tabacum HOM05D002729 ORTHO05D003163 1.7e-06 56.6 30 90.0
PSO729G0184 Papaver somniferum HOM05D030639 ORTHO05D022490 2.3e-06 56.2 38 68.4
Pp3c8_5590 Physcomitrium patens HOM05D002729 ORTHO05D022490 3.8e-06 55.5 32 78.1
Ah.09g233880 Amaranthus hybridus HOM05D002729 ORTHO05D003163 5.0e-06 55.1 127 62.2
FAN24G3453 Fragaria x ananassa HOM05D002729 ORTHO05D003163 5.0e-06 55.1 100 72.0
TWI31G0290 Tripterygium wilfordii HOM05D002729 ORTHO05D003163 5.0e-06 55.1 112 67.0
COL.COLO4_38062 Corchorus olitorius HOM05D002729 ORTHO05D003163 8.6e-06 54.3 29 89.7
PGSC0003DMG400024167 Solanum tuberosum HOM05D002729 ORTHO05D003163 8.6e-06 54.3 30 86.7


User provided reference genes

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