Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029242 Daucus carota HOM05D000534 ORTHO05D018172 2.7e-77 292.0 151 100.0
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 8.1e-58 227.3 188 69.1
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 4.5e-16 88.6 57 70.2
DCAR_013948 Daucus carota HOM05D000534 ORTHO05D000389 2.5e-14 82.8 48 95.8
DCAR_026243 Daucus carota HOM05D001677 ORTHO05D001682 2.5e-14 82.8 46 100.0
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.0e-11 73.2 105 41.0
DCAR_017618 Daucus carota HOM05D000534 ORTHO05D000389 7.5e-11 71.2 48 77.1
DCAR_017619 Daucus carota HOM05D000534 ORTHO05D000389 1.3e-10 70.5 58 67.2
CSS0024478 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 1.4e-09 67.0 48 72.9
CSS0033224 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 1.4e-09 67.0 48 72.9
Cc10_g00190 Coffea canephora HOM05D000534 ORTHO05D000389 1.4e-09 67.0 48 72.9
Haze_22872 Corylus avellana HOM05D000534 ORTHO05D000389 3.1e-09 65.9 48 72.9
Cfa014147 Carpinus fangiana HOM05D000534 ORTHO05D000389 4.1e-09 65.5 48 72.9
vmacro21747 Vaccinium macrocarpon HOM05D000534 ORTHO05D000389 5.3e-09 65.1 48 70.8
Nitab4.5_0000464g0020 Nicotiana tabacum HOM05D000534 ORTHO05D000389 7.0e-09 64.7 48 70.8
AUR62029515 Chenopodium quinoa HOM05D000534 ORTHO05D000389 9.1e-09 64.3 48 68.8
TAR376G0715 Trochodendron aralioides HOM05D000534 ORTHO05D000389 9.1e-09 64.3 48 72.9
Hma1.2p1_0489F.1_g164150 Hydrangea macrophylla HOM05D000534 ORTHO05D000389 1.2e-08 63.9 46 73.9
GSVIVG01026428001 Vitis vinifera HOM05D000534 ORTHO05D018172 1.2e-08 63.9 48 72.9
Actinidia15531 Actinidia chinensis HOM05D000534 ORTHO05D000389 1.6e-08 63.5 48 68.8
Dinv23334 Davidia involucrata HOM05D000534 ORTHO05D000389 1.6e-08 63.5 48 70.8
Oeu064729.3 Olea europaea HOM05D000534 ORTHO05D000389 1.6e-08 63.5 48 70.8
Manes.18G001300 Manihot esculenta HOM05D000534 ORTHO05D000389 2.0e-08 63.2 48 64.6
Atru.chr13.39 Acer truncatum HOM05D000534 ORTHO05D000389 2.7e-08 62.8 56 60.7
Nn6g31603 Nelumbo nucifera HOM05D000534 ORTHO05D000389 2.7e-08 62.8 48 68.8
CAN.G1330.19 Capsicum annuum HOM05D000534 ORTHO05D000389 3.5e-08 62.4 48 68.8
CiPaw.07G132100 Carya illinoinensis HOM05D000534 ORTHO05D000389 3.5e-08 62.4 48 68.8
Peaxi162Scf00385g00415 Petunia axillaris HOM05D000534 ORTHO05D000389 3.5e-08 62.4 46 73.9
Solyc04g082830.3 Solanum lycopersicum HOM05D000534 ORTHO05D000389 3.5e-08 62.4 48 66.7
Sopen04g036470 Solanum pennellii HOM05D000534 ORTHO05D000389 3.5e-08 62.4 48 66.7
PGSC0003DMG400009927 Solanum tuberosum HOM05D000534 ORTHO05D000389 3.5e-08 62.4 48 66.7
Ciclev10001325m.g Citrus clementina HOM05D000534 ORTHO05D000389 4.5e-08 62.0 48 64.6
Prupe.5G004100 Prunus persica HOM05D000534 ORTHO05D000389 4.5e-08 62.0 48 66.7
arahy.Tifrunner.gnm1.ann1.831XQD Arachis hypogaea HOM05D000534 ORTHO05D000389 5.9e-08 61.6 48 66.7
arahy.Tifrunner.gnm1.ann1.9WQ7IH Arachis hypogaea HOM05D000534 ORTHO05D000389 5.9e-08 61.6 48 66.7
Potri.002G003500 Populus trichocarpa HOM05D000534 ORTHO05D000389 5.9e-08 61.6 48 62.5
Prupe.5G004000 Prunus persica HOM05D000534 ORTHO05D000389 5.9e-08 61.6 48 66.7
QL02p015977 Quercus lobata HOM05D000534 ORTHO05D000389 5.9e-08 61.6 48 66.7
Nn5g31063 Nelumbo nucifera HOM05D000534 ORTHO05D000389 7.7e-08 61.2 48 68.8
Rhsim06G0002300 Rhododendron simsii HOM05D000534 ORTHO05D000389 1.0e-07 60.8 48 66.7
GSVIVG01026429001 Vitis vinifera HOM05D000534 ORTHO05D000389 1.3e-07 60.5 48 66.7
Aqoxy2G00177 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 62.5
Haze_03645 Corylus avellana HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 68.8
PGR119G0524 Punica granatum HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 66.7
SGA_v2.0_scaffold26G11249 Striga asiatica HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 60.4
Thecc.01G001200 Theobroma cacao HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 68.8
HPP92_007462 Vanilla planifolia HOM05D000534 ORTHO05D000389 1.7e-07 60.1 48 66.7
Cfa007117 Carpinus fangiana HOM05D000534 ORTHO05D000389 2.2e-07 59.7 48 68.8
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.2e-07 59.7 91 41.8
HanXRQChr14g0443891 Helianthus annuus HOM05D000534 ORTHO05D000389 2.2e-07 59.7 48 66.7
TWI56G0290 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 2.2e-07 59.7 48 60.4
HPP92_022735 Vanilla planifolia HOM05D000534 ORTHO05D000389 2.2e-07 59.7 48 64.6
Aqoxy6G03028 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 2.9e-07 59.3 48 64.6
Peaxi162Scf00064g01429 Petunia axillaris HOM05D000534 ORTHO05D000389 2.9e-07 59.3 46 69.6
Peaxi162Scf00385g00518 Petunia axillaris HOM05D000534 ORTHO05D000389 2.9e-07 59.3 46 69.6
SalBow7G3253 Salvia bowleyana HOM05D000534 ORTHO05D000389 2.9e-07 59.3 48 62.5
CANSAT25G2997 Cannabis sativa HOM05D000534 ORTHO05D000389 3.8e-07 58.9 48 60.4
CANSAT54G0250 Cannabis sativa HOM05D000534 ORTHO05D000389 3.8e-07 58.9 48 62.5
AUR62029514 Chenopodium quinoa HOM05D000534 ORTHO05D000389 3.8e-07 58.9 49 63.3
MBI01_g22968_MAGBIO Magnolia biondii HOM05D000534 ORTHO05D000389 3.8e-07 58.9 48 60.4
Oeu035762.1 Olea europaea HOM05D000534 ORTHO05D000389 3.8e-07 58.9 48 64.6
unitig_26.g9846 Utricularia gibba HOM05D000534 ORTHO05D000389 3.8e-07 58.9 48 60.4
Aqoxy6G03030 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 5.0e-07 58.5 46 67.4
Lj4A812T70 Lonicera japonica HOM05D000534 ORTHO05D000389 5.0e-07 58.5 48 66.7
RcHm_v2.0_Chr7g0217141 Rosa chinensis HOM05D000534 ORTHO05D000389 5.0e-07 58.5 48 62.5
Solyc12g095750.2 Solanum lycopersicum HOM05D000534 ORTHO05D000389 5.0e-07 58.5 48 62.5
Sopen12g031650 Solanum pennellii HOM05D000534 ORTHO05D000389 5.0e-07 58.5 48 62.5
GSVIVG01026430001 Vitis vinifera HOM05D000534 ORTHO05D000389 5.0e-07 58.5 48 66.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 6.5e-07 58.2 91 40.7
Cpa.g.c24967.2 Carica papaya HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 60.4
FvH4_5g26370 Fragaria vesca HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 62.5
FAN13G2571 Fragaria x ananassa HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 62.5
FAN18G0719 Fragaria x ananassa HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 62.5
Lj3g0001327 Lotus japonicus HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 68.8
MBI01_g22966_MAGBIO Magnolia biondii HOM05D000534 ORTHO05D000389 8.5e-07 57.8 46 65.2
RcHm_v2.0_Chr7g0217181 Rosa chinensis HOM05D000534 ORTHO05D000389 8.5e-07 57.8 48 60.4
CiPaw.07G000300 Carya illinoinensis HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 66.7
Eucgr.D01141 Eucalyptus grandis HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 60.4
Thhalv10009415m.g Eutrema salsugineum HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 54.2
FAN04G2757 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
FAN08G0707 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
Gohir.D03G000500 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
Gorai.003G000900 Gossypium raimondii HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
Peaxi162Scf00064g01428 Petunia axillaris HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
RcHm_v2.0_Chr7g0217111 Rosa chinensis HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 62.5
Thecc.10G097000 Theobroma cacao HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 58.3
TWI36G1379 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 1.1e-06 57.4 48 58.3
Atru.chr3.17 Acer truncatum HOM05D000534 ORTHO05D018172 1.5e-06 57.0 49 61.2
CSS0030994 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 1.5e-06 57.0 48 62.5
Migut.C00349 Erythranthe guttata HOM05D000534 ORTHO05D000389 1.5e-06 57.0 48 58.3
QL06p053397 Quercus lobata HOM05D000534 ORTHO05D000389 1.5e-06 57.0 48 66.7
Thecc.10G097300 Theobroma cacao HOM05D000534 ORTHO05D000389 1.5e-06 57.0 48 58.3
CARHR021390 Cardamine hirsuta HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 54.2
Duzib041G0347 Durio zibethinus HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 58.3
Gohir.A05G289600 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 58.3
Gohir.D05G291000 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 58.3
Gorai.009G306200 Gossypium raimondii HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 58.3
Lalb_Chr05g0229461 Lupinus albus HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 64.6
MD06G1002600 Malus domestica HOM05D000534 ORTHO05D000389 1.9e-06 56.6 48 64.6
Aqoxy5G00956 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 64.6
Duzib106G0713 Durio zibethinus HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 60.4
FvH4_5g26311 Fragaria vesca HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 60.4
FAN04G2583 Fragaria x ananassa HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 60.4
FAN08G2304 Fragaria x ananassa HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 60.4
MBI01_g22967_MAGBIO Magnolia biondii HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 62.5
Prupe.5G004300 Prunus persica HOM05D000534 ORTHO05D000389 2.5e-06 56.2 48 60.4
Eucgr.I02196 Eucalyptus grandis HOM05D000534 ORTHO05D000389 3.2e-06 55.8 48 60.4
RcHm_v2.0_Chr7g0217021 Rosa chinensis HOM05D000534 ORTHO05D000389 3.2e-06 55.8 48 58.3
RcHm_v2.0_Chr7g0219341 Rosa chinensis HOM05D000534 ORTHO05D000389 3.2e-06 55.8 48 58.3
CiPaw.08G077600 Carya illinoinensis HOM05D000534 ORTHO05D000389 4.2e-06 55.5 48 62.5
Eucgr.E03440 Eucalyptus grandis HOM05D000534 ORTHO05D000389 4.2e-06 55.5 46 60.9
Glyma.10G189000 Glycine max HOM05D000534 ORTHO05D000389 4.2e-06 55.5 48 62.5
Lsat_1_v5_gn_2_73081 Lactuca sativa HOM05D000534 ORTHO05D000389 4.2e-06 55.5 48 62.5
MD06G1002700 Malus domestica HOM05D000534 ORTHO05D000389 4.2e-06 55.5 48 62.5
Sed0027389 Sechium edule HOM05D000534 ORTHO05D000389 4.2e-06 55.5 48 62.5
AUR62029516 Chenopodium quinoa HOM05D000534 ORTHO05D000389 5.5e-06 55.1 44 63.6
Cc07_g12290 Coffea canephora HOM05D000534 ORTHO05D000389 5.5e-06 55.1 48 60.4
COL.COLO4_05369 Corchorus olitorius HOM05D000534 ORTHO05D000389 5.5e-06 55.1 48 58.3
Lsat_1_v5_gn_2_61140 Lactuca sativa HOM05D000534 ORTHO05D000389 5.5e-06 55.1 48 60.4
Ciclev10010809m.g Citrus clementina HOM05D000534 ORTHO05D000389 7.2e-06 54.7 48 66.7
Lalb_Chr10g0095521 Lupinus albus HOM05D000534 ORTHO05D018172 7.2e-06 54.7 60 51.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.4e-06 54.3 92 38.0
Zm00001eb316860 Zea mays HOM05D000534 ORTHO05D000389 9.4e-06 54.3 67 47.8


User provided reference genes

Program Settings