Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029199 Daucus carota HOM05D003627 ORTHO05D004307 2.7e-25 117.9 59 100.0
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 1.7e-11 72.0 39 87.2
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.9e-11 71.2 39 87.2
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.8e-11 70.9 39 84.6
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 84.6
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 5.0e-11 70.5 39 87.2
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 6.5e-11 70.1 39 84.6
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 6.5e-11 70.1 39 84.6
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 6.5e-11 70.1 40 82.5
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 1.1e-10 69.3 39 84.6
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.1e-10 69.3 39 84.6
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 82.1
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 1.4e-10 68.9 38 86.8
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 82.1
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 1.4e-10 68.9 39 84.6
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 1.9e-10 68.6 39 84.6
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 1.9e-10 68.6 39 82.1
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 1.9e-10 68.6 39 82.1
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 79.5
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 2.5e-10 68.2 40 80.0
Ah.10g026060 Amaranthus hybridus HOM05D003627 ORTHO05D004307 2.5e-10 68.2 42 76.2
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 82.1
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 84.6
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 82.1
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 82.1
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 2.5e-10 68.2 39 82.1
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 82.1
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 82.1
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 3.2e-10 67.8 38 84.2
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 82.1
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 82.1
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 79.5
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 3.2e-10 67.8 39 82.1
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 4.2e-10 67.4 39 82.1
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 5.5e-10 67.0 55 69.1
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 5.5e-10 67.0 39 79.5
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 82.1
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 79.5
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 7.2e-10 66.6 38 81.6
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 7.2e-10 66.6 39 82.1
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 9.4e-10 66.2 39 79.5
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 9.4e-10 66.2 39 76.9
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 76.9
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 79.5
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 1.2e-09 65.9 38 81.6
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 79.5
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 79.5
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 1.2e-09 65.9 38 81.6
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 1.2e-09 65.9 38 81.6
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 79.5
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 1.2e-09 65.9 39 79.5
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 76.9
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 1.6e-09 65.5 39 79.5
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 2.1e-09 65.1 39 76.9
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 2.1e-09 65.1 38 81.6
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.1e-09 65.1 38 78.9
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 2.1e-09 65.1 39 79.5
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 2.1e-09 65.1 39 76.9
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 2.1e-09 65.1 39 76.9
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 2.7e-09 64.7 39 76.9
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 2.7e-09 64.7 38 78.9
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 2.7e-09 64.7 39 76.9
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 3.6e-09 64.3 37 81.1
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.6e-09 64.3 39 74.4
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 3.6e-09 64.3 39 76.9
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 3.6e-09 64.3 39 76.9
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 3.6e-09 64.3 39 76.9
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 3.6e-09 64.3 39 76.9
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 76.9
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 4.7e-09 63.9 37 81.1
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 4.7e-09 63.9 37 81.1
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 79.5
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 79.5
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 79.5
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 74.4
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 76.9
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 4.7e-09 63.9 39 74.4
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 6.1e-09 63.5 38 78.9
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 6.1e-09 63.5 39 74.4
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 6.1e-09 63.5 39 74.4
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 7.9e-09 63.2 39 76.9
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 7.9e-09 63.2 39 76.9
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 7.9e-09 63.2 39 74.4
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 1.0e-08 62.8 39 71.8
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 1.0e-08 62.8 38 76.3
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 1.4e-08 62.4 39 71.8
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 1.4e-08 62.4 39 76.9
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.4e-08 62.4 39 71.8
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 1.8e-08 62.0 39 71.8
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 1.8e-08 62.0 39 76.9
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 1.8e-08 62.0 39 74.4
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 5.1e-08 60.5 39 74.4
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 6.7e-08 60.1 39 69.2
EL10Ac2g02580 Beta vulgaris HOM05D003627 ORTHO05D004307 9.7e-07 56.2 58 55.2
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.7e-06 54.3 39 61.5
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 3.7e-06 54.3 39 64.1
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 4.8e-06 53.9 55 52.7


User provided reference genes

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