Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.4e-272 942.6 958 100.0
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 2.7e-82 311.2 828 66.1
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 4.2e-75 287.3 831 60.6
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 2.7e-74 284.6 820 64.9
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 3.0e-73 281.2 832 64.2
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 2.4e-70 271.6 826 60.2
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 4.1e-70 270.8 838 59.9
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 1.7e-68 265.4 815 59.1
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 1.4e-67 262.3 800 56.1
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 9.4e-67 259.6 494 50.8
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 4.7e-66 257.3 823 62.9
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 6.1e-66 256.9 832 61.8
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 7.9e-66 256.5 494 55.7
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 1.1e-59 236.1 543 46.0
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-57 229.6 502 41.0
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 2.3e-57 228.4 505 36.8
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 5.2e-57 227.3 505 38.4
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 6.7e-57 226.9 487 54.2
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 4.4e-56 224.2 505 43.0
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 7.4e-56 223.4 509 42.0
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 1.7e-55 222.2 819 57.1
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 6.3e-55 220.3 504 39.5
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 1.1e-54 219.5 778 50.6
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-54 219.5 503 41.2
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 3.1e-54 218.0 503 45.5
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 1.0e-52 213.0 529 53.5
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 3.8e-52 211.1 488 46.3
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 1.9e-51 208.8 508 46.7
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 5.5e-51 207.2 497 51.9
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 8.8e-49 199.9 514 52.7
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 4.4e-48 197.6 514 52.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 5.7e-48 197.2 811 62.4
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 3.1e-46 191.4 527 47.4
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 9.1e-46 189.9 496 52.4
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 1.6e-45 189.1 495 52.1
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 7.7e-45 186.8 501 38.7
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 1.3e-44 186.0 800 62.0
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 1.7e-44 185.7 502 29.9
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.1e-43 183.0 835 60.7
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 5.5e-43 180.6 502 33.1
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 5.5e-43 180.6 505 42.4
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 9.4e-43 179.9 497 42.9
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 2.7e-42 178.3 494 41.5
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 6.1e-42 177.2 506 41.1
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 8.8e-41 173.3 798 61.7
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 2.0e-40 172.2 802 56.1
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 2.0e-40 172.2 245 40.8
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 7.5e-40 170.2 493 40.0
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 2.8e-39 168.3 798 61.3
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 4.9e-39 167.5 514 39.9
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 4.9e-39 167.5 514 39.9
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 2.7e-37 161.8 453 63.1
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.0e-36 159.8 522 27.4
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.3e-36 159.5 457 64.1
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 2.9e-36 158.3 361 50.4
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 5.0e-36 157.5 193 43.5
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 5.6e-35 154.1 679 29.5
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 7.2e-35 153.7 681 31.4
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 4.7e-34 151.0 497 48.7
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-33 149.4 216 36.6
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 2.6e-32 145.2 182 44.5
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 7.5e-32 143.7 359 45.1
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.2e-29 136.3 139 51.8
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 2.9e-28 131.7 486 43.8
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 1.2e-26 126.3 503 50.9
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 4.7e-26 124.4 522 51.0
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 2.3e-25 122.1 186 38.7
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 3.1e-25 121.7 506 37.4
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 4.0e-25 121.3 125 50.4
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 7.0e-22 110.5 214 32.7
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.5e-19 102.1 133 42.1
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.4e-17 96.3 137 40.9
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 2.3e-17 95.5 116 46.6
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 2.3e-17 95.5 120 43.3
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.4e-16 91.3 123 44.7
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 3.7e-15 88.2 110 46.4
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 8.3e-15 87.0 121 38.8
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 5.4e-14 84.3 179 32.4
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.6e-13 82.8 178 32.0
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 2.7e-13 82.0 73 49.3
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 1.7e-12 79.3 111 41.4
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 2.3e-12 79.0 92 39.1
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 2.3e-12 79.0 92 39.1
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 2.3e-12 79.0 92 39.1
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 6.6e-12 77.4 221 29.4
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.8e-09 69.3 134 30.6
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 4.4e-08 64.7 134 30.6
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 7.6e-08 63.9 118 36.4
Actinidia08309 Actinidia chinensis HOM05D000598 ORTHO05D009762 9.9e-08 63.5 57 54.4
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 2.2e-07 62.4 158 31.6
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 3.7e-07 61.6 146 30.1
Phvul.004G147700 Phaseolus vulgaris HOM05D004271 ORTHO05D006011 6.4e-07 60.8 141 27.7
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 6.4e-07 60.8 135 29.6
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 1.1e-06 60.1 159 29.6
Dinv42601 Davidia involucrata HOM05D016234 ORTHO05D016483 1.1e-06 60.1 161 26.1
A09p07640 Brassica napus HOM05D003975 ORTHO05D009762 1.4e-06 59.7 92 33.7
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.4e-06 59.7 117 31.6
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 2.4e-06 58.9 142 29.6
VMungo0464G1245 Vigna mungo HOM05D004271 ORTHO05D006011 4.1e-06 58.2 141 27.0
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 4.1e-06 58.2 104 33.7
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 5.4e-06 57.8 182 24.7
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 7.1e-06 57.4 188 24.5
Sp1g22250 Schrenkiella parvula HOM05D005622 ORTHO05D002854 7.1e-06 57.4 160 25.0
Zm00001eb030480 Zea mays HOM05D000001 ORTHO05D019578 7.1e-06 57.4 135 30.4
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 9.2e-06 57.0 160 23.8


User provided reference genes

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