Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 2143.2 1082 100.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1791.2 1098 82.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1779.2 1092 81.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1750.7 1086 81.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1094 81.0
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1742.2 1087 80.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1741.5 1097 80.2
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1740.7 1096 79.7
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1740.7 1093 79.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1737.2 1106 79.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1736.9 1102 79.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1736.1 1090 79.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1735.3 1095 79.9
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1734.5 1106 79.1
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1733.8 1090 79.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1733.8 1090 79.3
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1733.4 1100 79.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1732.6 1088 80.2
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1729.9 1100 78.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1106 78.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1727.2 1090 79.3
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1102 78.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1719.9 1098 78.1
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1082 80.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1714.9 1108 78.3
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1714.5 1108 78.3
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1711.4 1104 78.0
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1092 79.2
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1708.0 1096 77.6
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1105 78.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1706.8 1105 78.1
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1097 78.0
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1085 77.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1703.0 1105 77.2
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1101 77.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1702.2 1094 78.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 1081 79.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 1114 77.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1090 78.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1692.6 1105 77.7
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1128 76.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1102 77.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1105 77.8
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1684.1 1104 77.2
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1679.5 1100 76.5
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1100 76.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1676.0 1105 77.6
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1103 76.3
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1672.9 1094 77.1
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1672.1 1095 77.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1100 76.3
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1670.6 1102 77.0
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1107 76.4
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1097 76.2
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1182 72.6
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1664.0 1055 79.1
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1099 75.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1087 76.5
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1099 75.3
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1204 71.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1174 73.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1133 73.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1105 76.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1036 78.2
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1091 76.4
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1096 74.9
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1101 74.8
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1637.9 1093 74.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1094 74.7
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1042 76.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1043 76.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1021 78.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1043 76.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1614.4 1042 75.8
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1614.4 1042 76.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1091 73.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 1076 74.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 1063 74.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1042 75.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1607.8 1077 74.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1039 75.8
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1052 75.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1044 75.4
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1041 75.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1086 75.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1042 76.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1052 74.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1042 75.6
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1088 73.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1600.1 1093 73.4
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1042 75.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1099 74.1
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1042 75.2
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1047 75.1
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1042 75.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1597.4 1088 73.1
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1088 73.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1594.7 1088 72.9
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1593.2 1120 72.8
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1115 72.9
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1098 72.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1591.6 1088 73.0
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1590.1 1095 72.9
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1094 72.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1040 74.6
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1524.2 883 85.3
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1517.7 969 77.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1496.9 1130 68.6
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1478.8 1020 73.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1473.4 928 78.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1473.0 1105 69.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1453.7 1027 68.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1414.4 1016 67.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1352.0 1116 65.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1351.7 1116 65.0
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1350.9 971 67.8
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1335.9 802 81.7
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1286.9 1013 63.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1224.9 1071 59.7
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1213.4 841 72.3
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1212.6 748 80.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1174.1 765 78.0
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1161.7 739 80.2
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1115.1 1003 54.4
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1113.6 722 75.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1109.0 1041 53.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1087.0 997 55.5
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.9e-282 974.9 895 57.3
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.0e-279 965.7 899 59.1
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.5e-266 921.4 596 79.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-265 919.1 774 58.7
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 6.5e-258 894.8 593 73.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.5e-241 838.6 986 44.5
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.9e-213 746.5 671 56.0
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.9e-213 745.7 642 61.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.3e-210 736.9 704 56.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.6e-203 712.6 463 79.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 6.4e-181 639.0 407 77.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.7e-178 630.9 531 65.0
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.1e-175 621.7 502 66.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.0e-175 618.6 408 75.0
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 6.3e-160 569.3 347 83.0
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 6.3e-160 569.3 484 64.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.6e-155 554.7 393 67.9
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.5e-153 548.1 1042 36.2
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.6e-142 510.8 402 68.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 8.5e-133 479.2 393 63.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.7e-130 469.5 309 73.5
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.1e-127 460.7 327 67.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.2e-112 411.4 1027 30.3
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.7e-107 393.7 999 29.8
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.0e-105 388.3 288 72.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.4e-103 381.3 992 28.4
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 7.3e-100 369.8 226 80.1
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.9e-93 347.4 902 29.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.0e-77 294.7 168 82.7
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 9.0e-58 229.9 861 23.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.6e-54 217.6 332 37.7
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-53 216.5 222 50.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 4.3e-52 211.1 310 43.5
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 4.6e-46 191.0 124 77.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.6e-43 182.6 217 53.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.3e-42 177.6 153 59.5
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.5e-41 176.0 180 54.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.6e-41 173.7 155 56.8
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.2e-38 166.4 150 66.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 4.6e-38 164.5 285 36.1
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.5e-36 158.7 149 56.4
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.3e-35 156.4 134 61.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 5.3e-34 151.0 478 27.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 5.5e-31 141.0 181 39.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.3e-24 119.8 447 25.3
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 6.5e-24 117.5 215 35.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 8.8e-21 107.1 74 67.6
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.8e-19 102.1 277 23.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-17 95.5 83 61.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.0e-13 82.0 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 3.3e-12 78.6 51 68.6
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 7.5e-12 77.4 51 66.7
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 7.0e-10 70.9 140 37.9
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 9.1e-10 70.5 45 75.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-08 67.0 77 49.4
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.3e-08 66.6 169 39.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 2.2e-08 65.9 36 83.3


User provided reference genes

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