Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029020 Daucus carota HOM05D001841 ORTHO05D001767 9.6e-182 640.2 362 100.0
Lj9C359T11 Lonicera japonica HOM05D001841 ORTHO05D001767 1.2e-11 75.1 142 40.1
DCAR_022056 Daucus carota HOM05D001841 ORTHO05D001767 2.1e-11 74.3 132 43.9
Gohir.A12G025600 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.1e-11 74.3 382 27.2
Gohir.D01G006300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.1e-11 74.3 139 41.7
Gorai.002G007300 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.1e-11 74.3 139 41.7
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 2.8e-11 73.9 410 27.6
Manes.15G142400 Manihot esculenta HOM05D001841 ORTHO05D001767 4.7e-11 73.2 176 38.1
Gohir.A01G006300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.1e-11 72.8 123 43.9
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 6.1e-11 72.8 263 30.0
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 1.0e-10 72.0 119 43.7
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.4e-10 71.6 388 27.3
Gorai.008G025600 Gossypium raimondii HOM05D001841 ORTHO05D001767 1.4e-10 71.6 382 26.7
Duzib248G1481 Durio zibethinus HOM05D001841 ORTHO05D001767 3.0e-10 70.5 172 35.5
Manes.17G093500 Manihot esculenta HOM05D001841 ORTHO05D001767 3.0e-10 70.5 148 39.9
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 4.0e-10 70.1 277 29.6
Gohir.D12G025300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 4.0e-10 70.1 382 26.4
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 4.0e-10 70.1 137 40.9
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 4.0e-10 70.1 144 37.5
COL.COLO4_32685 Corchorus olitorius HOM05D001841 ORTHO05D001767 5.2e-10 69.7 223 33.2
HanXRQChr16g0508701 Helianthus annuus HOM05D001841 ORTHO05D001767 5.2e-10 69.7 117 36.8
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 1.2e-09 68.6 370 27.0
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.2e-09 68.6 106 42.5
HanXRQChr03g0072211 Helianthus annuus HOM05D001841 ORTHO05D001767 2.0e-09 67.8 115 38.3
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 2.0e-09 67.8 379 25.6
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 2.6e-09 67.4 363 25.6
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 2.6e-09 67.4 199 32.2
DCAR_022057 Daucus carota HOM05D001841 ORTHO05D001767 5.8e-09 66.2 363 26.7
Medtr4g086620 Medicago truncatula HOM05D001841 ORTHO05D001767 5.8e-09 66.2 359 26.5
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 5.8e-09 66.2 110 38.2
Sed0008283 Sechium edule HOM05D001841 ORTHO05D001767 5.8e-09 66.2 384 29.2
ClCG02G005790 Citrullus lanatus HOM05D001841 ORTHO05D001767 7.5e-09 65.9 362 27.6
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 7.5e-09 65.9 389 26.7
THA.LOC104819587 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 7.5e-09 65.9 102 42.2
TWI31G1305 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 7.5e-09 65.9 380 25.8
CsaV3_7G008710 Cucumis sativus L. HOM05D001841 ORTHO05D001767 9.8e-09 65.5 379 26.6
Glyma.07G210700 Glycine max HOM05D001841 ORTHO05D001767 9.8e-09 65.5 190 32.6
FAN17G2325 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.3e-08 65.1 104 44.2
Cpa.g.sc62.35 Carica papaya HOM05D001841 ORTHO05D001767 1.7e-08 64.7 95 42.1
CiPaw.05G053900 Carya illinoinensis HOM05D001841 ORTHO05D001767 1.7e-08 64.7 238 31.9
DCAR_029024 Daucus carota HOM05D001841 ORTHO05D001767 1.7e-08 64.7 203 31.0
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 1.7e-08 64.7 366 28.7
Lsat_1_v5_gn_9_110401 Lactuca sativa HOM05D001841 ORTHO05D001767 2.2e-08 64.3 366 27.9
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 2.2e-08 64.3 378 26.5
Rhsim05G0081500 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.2e-08 64.3 134 38.1
Phvul.003G012800 Phaseolus vulgaris HOM05D001841 ORTHO05D001767 2.9e-08 63.9 94 43.6
Solyc01g108440.2 Solanum lycopersicum HOM05D001841 ORTHO05D001767 2.9e-08 63.9 266 28.9
VMungo0251G0262 Vigna mungo HOM05D001841 ORTHO05D001767 2.9e-08 63.9 223 32.7
MELO3C018439.2 Cucumis melo HOM05D001841 ORTHO05D001767 3.7e-08 63.5 373 25.7
Oeu009759.1 Olea europaea HOM05D001841 ORTHO05D001767 3.7e-08 63.5 219 29.7
Sopen04g032960 Solanum pennellii HOM05D001841 ORTHO05D001767 3.7e-08 63.5 108 38.0
CDE10G1358 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 4.9e-08 63.2 128 34.4
Duzib052G0781 Durio zibethinus HOM05D001841 ORTHO05D001767 4.9e-08 63.2 381 28.1
Lj4C50T9 Lonicera japonica HOM05D001841 ORTHO05D001767 4.9e-08 63.2 222 28.8
Solyc04g079350.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 4.9e-08 63.2 108 38.0
Sopen01g050670 Solanum pennellii HOM05D001841 ORTHO05D001767 4.9e-08 63.2 266 28.9
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 6.4e-08 62.8 202 36.6
Ca_12461_v3 Cicer arietinum L. HOM05D001841 ORTHO05D001767 6.4e-08 62.8 96 40.6
Duzib093G1523 Durio zibethinus HOM05D001841 ORTHO05D001767 6.4e-08 62.8 116 37.1
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 6.4e-08 62.8 220 29.5
Peaxi162Scf00016g01610 Petunia axillaris HOM05D001841 ORTHO05D001767 6.4e-08 62.8 207 30.0
CAN.G322.15 Capsicum annuum HOM05D001841 ORTHO05D001767 8.3e-08 62.4 94 42.6
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 8.3e-08 62.4 361 24.9
Haze_01864 Corylus avellana HOM05D001841 ORTHO05D001767 8.3e-08 62.4 367 25.9
Hma1.2p1_0260F.1_g104720 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 8.3e-08 62.4 123 34.1
Psat7g121880 Pisum sativum HOM05D001841 ORTHO05D001767 8.3e-08 62.4 361 27.4
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 1.4e-07 61.6 225 29.8
FAN21G2199 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.4e-07 61.6 141 38.3
Solyc10g045480.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.4e-07 61.6 108 37.0
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.4e-07 61.6 201 30.8
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 1.9e-07 61.2 394 27.9
Nitab4.5_0001413g0040 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.9e-07 61.2 199 33.2
CiPaw.06G142300 Carya illinoinensis HOM05D001841 ORTHO05D001767 2.4e-07 60.8 372 26.3
FAN03G2329 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.4e-07 60.8 128 40.6
FAN06G1731 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.4e-07 60.8 128 40.6
FAN24G3445 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.4e-07 60.8 128 40.6
Phvul.003G294400 Phaseolus vulgaris HOM05D001841 ORTHO05D001767 2.4e-07 60.8 155 35.5
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 2.4e-07 60.8 396 26.3
DCAR_020935 Daucus carota HOM05D001841 ORTHO05D001767 3.2e-07 60.5 228 29.8
DCAR_029023 Daucus carota HOM05D001841 ORTHO05D001767 3.2e-07 60.5 230 29.6
FAN27G1419 Fragaria x ananassa HOM05D001841 ORTHO05D001767 3.2e-07 60.5 140 38.6
MBI06_g08193_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 3.2e-07 60.5 143 35.7
MD15G1087600 Malus domestica HOM05D001841 ORTHO05D001767 3.2e-07 60.5 92 42.4
Sc15g0006420 Simmondsia chinensis HOM05D001841 ORTHO05D001767 3.2e-07 60.5 98 38.8
TWI79G0295 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 3.2e-07 60.5 371 25.1
Actinidia12979 Actinidia chinensis HOM05D001841 ORTHO05D001767 4.1e-07 60.1 235 28.5
HanXRQChr04g0128301 Helianthus annuus HOM05D001841 ORTHO05D001767 4.1e-07 60.1 232 29.7
Nitab4.5_0000557g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 4.1e-07 60.1 204 32.4
Aa31LG8G13350 Aethionema arabicum HOM05D001841 ORTHO05D001767 5.4e-07 59.7 96 41.7
Aqoxy5G01297 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 5.4e-07 59.7 361 26.6
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 5.4e-07 59.7 221 31.2
Ciclev10028742m.g Citrus clementina HOM05D001841 ORTHO05D001767 5.4e-07 59.7 350 26.3
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 5.4e-07 59.7 401 26.7
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 5.4e-07 59.7 391 26.1
Peaxi162Scf00684g00582 Petunia axillaris HOM05D001841 ORTHO05D001767 5.4e-07 59.7 95 40.0
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 5.4e-07 59.7 196 32.1
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 7.0e-07 59.3 394 27.7
FAN23G1430 Fragaria x ananassa HOM05D001841 ORTHO05D001767 7.0e-07 59.3 128 39.8
Oeu011565.1 Olea europaea HOM05D001841 ORTHO05D001767 7.0e-07 59.3 223 30.9
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 7.0e-07 59.3 215 29.8
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 7.0e-07 59.3 93 41.9
Lalb_Chr16g0384591 Lupinus albus HOM05D001841 ORTHO05D001767 9.2e-07 58.9 168 33.9
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 9.2e-07 58.9 239 28.5
PGSC0003DMG400025897 Solanum tuberosum HOM05D001841 ORTHO05D001767 9.2e-07 58.9 198 31.8
BcaC04g23039 Brassica carinata HOM05D001841 ORTHO05D001767 1.2e-06 58.5 99 38.4
A09p10840 Brassica napus HOM05D001841 ORTHO05D001767 1.2e-06 58.5 99 38.4
C09p12820 Brassica napus HOM05D001841 ORTHO05D001767 1.2e-06 58.5 99 38.4
BolC9t54171H Brassica oleracea HOM05D001841 ORTHO05D001767 1.2e-06 58.5 99 38.4
FAN13G0577 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.2e-06 58.5 89 44.9
FAN18G3839 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.2e-06 58.5 89 44.9
FAN24G0298 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.2e-06 58.5 89 44.9
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.2e-06 58.5 394 28.2
Glyma.07G177600 Glycine max HOM05D001841 ORTHO05D001767 1.2e-06 58.5 136 39.0
PSO675G9020 Papaver somniferum HOM05D001841 ORTHO05D001767 1.2e-06 58.5 199 29.1
Psat6g011080 Pisum sativum HOM05D001841 ORTHO05D001767 1.2e-06 58.5 206 30.6
Actinidia00458 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.6e-06 58.2 366 27.9
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 1.6e-06 58.2 389 27.2
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.6e-06 58.2 394 27.7
PSO017G5918 Papaver somniferum HOM05D001841 ORTHO05D001767 1.6e-06 58.2 92 39.1
TAR376G0142 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.6e-06 58.2 249 27.7
Psat6g095760 Pisum sativum HOM05D001841 ORTHO05D001767 2.0e-06 57.8 126 37.3
Prupe.8G119300 Prunus persica HOM05D001841 ORTHO05D001767 2.0e-06 57.8 407 27.0
CSS0048284 Camellia sinensis var. sinensis HOM05D001841 ORTHO05D001767 2.7e-06 57.4 117 35.9
CDE10G1361 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 2.7e-06 57.4 224 29.0
FAN12G0524 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.7e-06 57.4 178 33.7
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 2.7e-06 57.4 362 27.1
Gorai.002G130900 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.7e-06 57.4 210 31.4
Lsat_1_v5_gn_7_87380 Lactuca sativa HOM05D001841 ORTHO05D001767 2.7e-06 57.4 361 25.5
Ca_18656_v3 Cicer arietinum L. HOM05D001841 ORTHO05D001767 3.5e-06 57.0 372 25.5
Oeu032237.1 Olea europaea HOM05D001841 ORTHO05D001767 3.5e-06 57.0 224 30.4
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 3.5e-06 57.0 199 28.6
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 3.5e-06 57.0 92 41.3
CAN.G371.51 Capsicum annuum HOM05D001841 ORTHO05D001767 4.6e-06 56.6 100 38.0
Gohir.A01G118400 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.0e-06 56.2 186 30.6
HanXRQChr02g0038421 Helianthus annuus HOM05D001841 ORTHO05D001767 6.0e-06 56.2 158 31.0
Lalb_Chr10g0095491 Lupinus albus HOM05D001841 ORTHO05D001767 6.0e-06 56.2 159 35.2
Sabra04G0095000 Salix brachista HOM05D001841 ORTHO05D001767 6.0e-06 56.2 389 26.5
THA.LOC104823942 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 6.0e-06 56.2 122 37.7
TWI75G0920 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 6.0e-06 56.2 362 24.9
BraA07t28298Z Brassica rapa HOM05D001841 ORTHO05D001767 7.8e-06 55.8 98 37.8
Lsat_1_v5_gn_4_124961 Lactuca sativa HOM05D001841 ORTHO05D001767 7.8e-06 55.8 221 26.7
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 7.8e-06 55.8 147 28.6


User provided reference genes

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